Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-AB37-01A | TCGA-DX-AB37 | ST7|TBXAS1 | ST7 | TBXAS1 | 7 | 7 | 1 | 1 | 10 | 11 | 9 | 0.85 | 116593745 | 139706891 | tier1 | Out-of-frame | 16968 | NA | 0 |
| PAAD | TCGA-IB-8127-01A | TCGA-IB-8127 | FBXW8|CDK17 | FBXW8 | CDK17 | 12 | 12 | 1 | -1 | 2 | 3 | 1 | 2.4 | 117383333 | 96728643 | tier2 | CDS-5UTR | 6378 | NA | 0.35539 |
| SARC | TCGA-DX-A2J0-01A | TCGA-DX-A2J0 | ELK3|CDK17 | ELK3 | CDK17 | 12 | 12 | 1 | -1 | 10 | 9 | 8 | 0.62 | 96617551 | 96694138 | tier1 | In-frame | 5500 | non-validated | 0.36928 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | GLIPR1|CDK17 | GLIPR1 | CDK17 | 12 | 12 | 1 | -1 | 27 | 11 | 10 | 0.87 | 75875859 | 96728643 | tier1 | CDS-5UTR | 7106 | NA | 0.33728 |
| SARC | TCGA-DX-A23V-01A | TCGA-DX-A23V | MED13L|CDK17 | MED13L | CDK17 | 12 | 12 | -1 | -1 | 5 | 1 | 1 | 1.4 | 116418555 | 96728643 | tier2 | CDS-5UTR | 10176 | NA | 0.35693 |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | TDG|CDK17 | TDG | CDK17 | 12 | 12 | 1 | -1 | 105 | 101 | 98 | 0.48 | 104359838 | 96683065 | tier1 | Out-of-frame | 17618 | NA | 0 |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | ERC1|WNK1 | ERC1 | WNK1 | 12 | 12 | 1 | 1 | 2 | 20 | 19 | 0.089 | 1213990 | 977032 | tier4 | In-frame | 5758 | NA | 0.37749 |
| LUAD | TCGA-78-8660-01A | TCGA-78-8660 | ERC1|WNK1 | ERC1 | WNK1 | 12 | 12 | 1 | 1 | 6 | 4 | 2 | 0.089 | 1137738 | 987378 | tier1 | In-frame | 5757 | NA | 0.37749 |
| BRCA | TCGA-A7-A4SD-01A | TCGA-A7-A4SD | MACF1|PTPRU | MACF1 | PTPRU | 1 | 1 | 1 | 1 | 6 | 3 | 3 | 0.38 | 39571389 | 29581787 | tier4 | NA | 9733 | NA | 0.37634 |
| PAAD | TCGA-HZ-A49I-01A | TCGA-HZ-A49I | KIAA0528|BCAT1 | KIAA0528 | BCAT1 | 12 | 12 | -1 | -1 | 4 | 1 | 1 | 0.38 | 22627685 | 25002883 | tier2 | In-frame | 8789 | NA | 0.35073 |
| SKCM | TCGA-ER-A193-06A | TCGA-ER-A193 | DIP2B|BCAT1 | DIP2B | BCAT1 | 12 | 12 | 1 | -1 | 75 | 48 | 47 | 0.73 | 50899023 | 24982831 | tier4 | Out-of-frame | 4833 | NA | 0.34533 |
| BLCA | TCGA-E7-A5KE-01A | TCGA-E7-A5KE | RPAP3|HDAC7 | RPAP3 | HDAC7 | 12 | 12 | -1 | -1 | 14 | 8 | 7 | 0.34 | 48095247 | 48196057 | tier1 | Out-of-frame | 14971 | NA | 0 |
| PRAD | TCGA-V1-A8WS-01A | TCGA-V1-A8WS | LOH12CR1|HDAC7 | LOH12CR1 | HDAC7 | 12 | 12 | 1 | -1 | 8 | 7 | 7 | 0.085 | 12510443 | 48185787 | tier1 | In-frame | 9420 | NA | 0.37819 |
| UCEC | TCGA-PG-A914-01A | TCGA-PG-A914 | CTNNA1|WNT8A | CTNNA1 | WNT8A | 5 | 5 | 1 | 1 | 10 | 9 | 9 | 0.72 | 138223331 | 137420187 | tier1 | In-frame | 4352 | NA | 0.36632 |
| LUAD | TCGA-05-4427-01A | TCGA-05-4427 | PPP2CA|CDH3 | PPP2CA | CDH3 | 5 | 16 | -1 | 1 | 25 | 5 | 5 | 2.1 | 133561451 | 68710288 | tier1 | Out-of-frame | 13384 | NA | 0.38118 |
| LUSC | TCGA-94-7557-01A | TCGA-94-7557 | NFAT5|CDH3 | NFAT5 | CDH3 | 16 | 16 | 1 | 1 | 16 | 18 | 16 | 1.9 | 69704191 | 68732094 | tier1 | In-frame | 11434 | NA | 0.36846 |
| THCA | TCGA-FY-A3R6-01A | TCGA-FY-A3R6 | UACA|LTK | UACA | LTK | 15 | 15 | -1 | -1 | 54 | 25 | 24 | 0.78 | 70957001 | 41799372 | tier1 | Out-of-frame | 19014 | NA | 0 |
| SKCM | TCGA-FS-A1YX-06A | TCGA-FS-A1YX | DBP|CA11 | DBP | CA11 | 19 | 19 | -1 | -1 | 2 | 5 | 5 | 1.2 | 49140113 | 49142878 | tier4 | Out-of-frame | 4564 | NA | 0.34503 |
| LUSC | TCGA-33-4547-01A | TCGA-33-4547 | NRF1|MTMR1 | NRF1 | MTMR1 | 7 | X | 1 | 1 | 12 | 15 | 15 | 0.57 | 129251665 | 149919202 | tier1 | 5UTR-CDS | 11743 | NA | 0.3597 |
| UCS | TCGA-NA-A4R1-01A | TCGA-NA-A4R1 | KIF1B|HAGH | KIF1B | HAGH | 1 | 16 | 1 | -1 | 8 | 3 | 3 | 0.013 | 10428596 | 1873038 | tier1 | Out-of-frame | 8960 | NA | 0.37135 |
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