Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-55-7911-01A | TCGA-55-7911 | MMP28|KCNJ12 | MMP28 | KCNJ12 | 17 | 17 | -1 | 1 | 4 | 4 | 2 | 0.21 | 34105892 | 21311831 | tier1 | CDS-5UTR | 10550 | NA | 0.36533 |
| LIHC | TCGA-HP-A5MZ-01A | TCGA-HP-A5MZ | SERPINA3|LAP3 | SERPINA3 | LAP3 | 14 | 4 | 1 | 1 | 2 | 1 | 1 | 0.02 | 95090392 | 17585225 | tier4 | NA | 15665 | NA | 0 |
| LIHC | TCGA-K7-A6G5-01A | TCGA-K7-A6G5 | SERPINA3|EIF2AK2 | SERPINA3 | EIF2AK2 | 14 | 2 | 1 | -1 | 2 | 136 | 121 | 0.31 | 95090389 | 37342384 | tier3 | NA | 15664 | NA | 0 |
| PRAD | TCGA-HC-A6AO-01A | TCGA-HC-A6AO | SERPINA3|RPL23 | SERPINA3 | RPL23 | 14 | 17 | 1 | -1 | 2 | 8 | 6 | 0.087 | 95090983 | 37009988 | tier3 | 3UTR-5UTR | 15666 | NA | 0 |
| BRCA | TCGA-C8-A26X-01A | TCGA-C8-A26X | MLLT6|ACE | MLLT6 | ACE | 17 | 17 | 1 | 1 | 26 | 7 | 5 | 0.31 | 36868267 | 61573755 | tier1 | Out-of-frame | 10531 | NA | 0.3696 |
| BRCA | TCGA-AR-A2LJ-01A | TCGA-AR-A2LJ | MLLT6|KIRREL3 | MLLT6 | KIRREL3 | 17 | 11 | 1 | -1 | 8 | 2 | 2 | 0.085 | 36865828 | 126343361 | tier1 | Out-of-frame | 10532 | NA | 0.37034 |
| KIRC | TCGA-B0-5088-01A | TCGA-B0-5088 | MLLT6|AATF | MLLT6 | AATF | 17 | 17 | 1 | 1 | 13 | 7 | 5 | 0.014 | 36864125 | 35345818 | tier1 | Out-of-frame | 10530 | NA | 0.37074 |
| LGG | TCGA-DU-A5TP-01A | TCGA-DU-A5TP | MLLT6|PPP1R12A | MLLT6 | PPP1R12A | 17 | 12 | 1 | -1 | 2 | 3 | 3 | 0.44 | 36879021 | 80242711 | tier3 | NA | 10533 | NA | 0.38016 |
| READ | TCGA-EI-6882-01A | TCGA-EI-6882 | FCGBP|PLEKHB2 | FCGBP | PLEKHB2 | 19 | 2 | -1 | 1 | 2 | 12 | 3 | 0.72 | 40353964 | 131876464 | tier3 | 3UTR-5UTR | 6380 | NA | 0.35878 |
| LUSC | TCGA-O2-A52S-01A | TCGA-O2-A52S | DUSP14|ATP6V0A1 | DUSP14 | ATP6V0A1 | 17 | 17 | 1 | 1 | 91 | 35 | 31 | 2.8 | 35850064 | 40629657 | tier1 | 5UTR-CDS | 5179 | NA | 0.36187 |
| BRCA | TCGA-A8-A09I-01A | TCGA-A8-A09I | DUSP14|EME1 | DUSP14 | EME1 | 17 | 17 | 1 | 1 | 41 | 42 | 39 | 1.6 | 35850064 | 48452546 | tier1 | 5UTR-5UTR | 5180 | validated | 0.36074 |
| BRCA | TCGA-E2-A106-01A | TCGA-E2-A106 | UHRF1|ACTA2 | UHRF1 | ACTA2 | 19 | 10 | 1 | -1 | 71 | 50 | 39 | 0.88 | 4911050 | 90707143 | tier4 | In-frame | 19204 | NA | 0 |
| UCEC | TCGA-5B-A90C-01A | TCGA-5B-A90C | UHRF1|AC011498.1 | UHRF1 | AC011498.1 | 19 | 19 | 1 | 1 | 5 | 5 | 5 | 4.1 | 4932968 | 4488673 | tier1 | Out-of-frame | 19203 | NA | 0 |
| BRCA | TCGA-AC-A2FB-01A | TCGA-AC-A2FB | PIP4K2B|SLC6A4 | PIP4K2B | SLC6A4 | 17 | 17 | -1 | -1 | 7 | 7 | 5 | 0.11 | 36943076 | 28549933 | tier1 | CDS-5UTR | 12867 | NA | 0.36761 |
| BRCA | TCGA-A7-A4SF-01A | TCGA-A7-A4SF | PIP4K2B|MED24 | PIP4K2B | MED24 | 17 | 17 | -1 | -1 | 141 | 58 | 53 | 0.8 | 36933940 | 38188343 | tier1 | In-frame | 12865 | NA | 0.3702 |
| BRCA | TCGA-AC-A2FB-01A | TCGA-AC-A2FB | PIP4K2B|SHANK2 | PIP4K2B | SHANK2 | 17 | 11 | -1 | -1 | 79 | 82 | 68 | 0.043 | 36933940 | 70742672 | tier1 | NA | 12866 | NA | 0.37438 |
| BRCA | TCGA-BH-A0B7-01A | TCGA-BH-A0B7 | PIP4K2B|TMEM132E | PIP4K2B | TMEM132E | 17 | 17 | -1 | 1 | 6 | 6 | 4 | 0.07 | 36955519 | 32953146 | tier1 | Out-of-frame | 12868 | NA | 0.36647 |
| BRCA | TCGA-C8-A26W-01A | TCGA-C8-A26W | PIP4K2B|TMEM99 | PIP4K2B | TMEM99 | 17 | 17 | -1 | 1 | 24 | 30 | 27 | 1.5 | 36933940 | 38989367 | tier1 | CDS-5UTR | 12869 | NA | 0.36698 |
| STAD | TCGA-BR-A4QI-01A | TCGA-BR-A4QI | PIP4K2B|CWC25 | PIP4K2B | CWC25 | 17 | 17 | -1 | -1 | 3 | 68 | 67 | 1.7 | 36933940 | 36963229 | tier1 | In-frame | 12864 | NA | 0.36425 |
| CHOL | TCGA-W5-AA31-01A | TCGA-W5-AA31 | CCL14|MYH10 | CCL14 | MYH10 | 17 | 17 | -1 | -1 | 22 | 7 | 7 | 0.41 | 34313607 | 8526815 | tier1 | NA | 3203 | NA | 0.38282 |
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