TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
OV	TCGA-23-1122-01A	TCGA-23-1122	KIAA0195\|TTYH2	KIAA0195	TTYH2	17	17	1	1	14	1	1	0.005	73452832	72227027	tier2	5UTR-CDS	8753	NA	0.3359
SARC	TCGA-3B-A9HI-01A	TCGA-3B-A9HI	KIAA0195\|LRRC52	KIAA0195	LRRC52	17	1	1	1	10	13	11	0.92	73468010	165532742	tier1	Out-of-frame	8750	NA	0.33358
STAD	TCGA-FP-8631-01A	TCGA-FP-8631	KIAA0195\|TMEM104	KIAA0195	TMEM104	17	17	1	1	2	1	1	0.92	73482507	72832066	tier4	In-frame	8752	NA	0.3319
LGG	TCGA-E1-5304-01A	TCGA-E1-5304	KCNJ10\|CISD2	KCNJ10	CISD2	1	4	-1	1	170	78	66	1.5	160039812	103806373	tier1	5UTR-CDS	8575	NA	0.353
SKCM	TCGA-FR-A7U9-06A	TCGA-FR-A7U9	ADAMTSL1\|WNT5B	ADAMTSL1	WNT5B	9	12	1	1	35	27	22	0.66	18474293	1740464	tier1	CDS-5UTR	448	NA	0.35566
LUSC	TCGA-68-A59I-01A	TCGA-68-A59I	ADAMTSL1\|ERV3-1	ADAMTSL1	ERV3-1	9	7	1	-1	2	2	2	0.78	18504954	64453792	tier3	CDS-5UTR	447	NA	0.34705
BRCA	TCGA-AC-A3TM-01A	TCGA-AC-A3TM	P4HTM\|C16orf73	P4HTM	C16orf73	3	16	1	-1	10	6	4	100	49028347	1884367	tier1	Out-of-frame	12158	NA	0
ACC	TCGA-OR-A5K6-01A	TCGA-OR-A5K6	ERN1\|TEX2	ERN1	TEX2	17	17	-1	-1	173	52	46	0.21	62141346	62238293	tier1	In-frame	5788	NA	0.38155
LIHC	TCGA-BC-A10R-01A	TCGA-BC-A10R	ERN1\|TEX2	ERN1	TEX2	17	17	-1	-1	2	2	2	0.21	62157022	62254831	tier3	In-frame	5786	NA	0.38155
LIHC	TCGA-CC-A7IJ-01A	TCGA-CC-A7IJ	ERN1\|TEX2	ERN1	TEX2	17	17	-1	-1	11	10	10	0.21	62157022	62272455	tier1	In-frame	5787	NA	0.38155
BRCA	TCGA-AO-A03V-01A	TCGA-AO-A03V	GPR35\|MELK	GPR35	MELK	2	9	1	1	2	1	1	0.19	241558448	36642994	tier2	5UTR-CDS	7376	NA	0.37921
PAAD	TCGA-2J-AABR-01A	TCGA-2J-AABR	GPR35\|ANKMY1	GPR35	ANKMY1	2	2	1	-1	2	6	6	0.94	241558448	241468926	tier4	5UTR-CDS	7374	NA	0.35887
PAAD	TCGA-FB-AAPZ-01A	TCGA-FB-AAPZ	GPR35\|ANKMY1	GPR35	ANKMY1	2	2	1	-1	3	3	3	0.94	241558448	241468926	tier1	5UTR-CDS	7375	NA	0.35887
UCS	TCGA-N8-A4PP-01A	TCGA-N8-A4PP	GPR35\|TIA1	GPR35	TIA1	2	2	1	-1	7	5	4	0.38	241546029	70444126	tier1	5UTR-CDS	7377	NA	0.37357
BLCA	TCGA-FD-A6TE-01A	TCGA-FD-A6TE	GAK\|SPON2	GAK	SPON2	4	4	-1	-1	10	7	6	0.29	853394	1173329	tier1	NA	6908	NA	0.38093
BLCA	TCGA-CU-A5W6-01A	TCGA-CU-A5W6	GAK\|LUC7L3	GAK	LUC7L3	4	17	-1	1	10	20	17	3.9	843066	48834056	tier1	NA	6905	NA	0.37723
BRCA	TCGA-A8-A07R-01A	TCGA-A8-A07R	GAK\|MAGI1	GAK	MAGI1	4	3	-1	-1	8	3	2	0.018	905461	65607763	tier1	In-frame	6906	NA	0.38392
PRAD	TCGA-YL-A9WL-01A	TCGA-YL-A9WL	GAK\|MEX3D	GAK	MEX3D	4	19	-1	-1	23	22	21	0.45	875695	1556922	tier1	Out-of-frame	6907	NA	0.37947
BRCA	TCGA-BH-A1F6-01A	TCGA-BH-A1F6	AURKB\|MYH10	AURKB	MYH10	17	17	-1	-1	2	7	7	0.029	8113848	8452105	tier3	5UTR-CDS	1823	NA	0.3832
PRAD	TCGA-KK-A6E5-01A	TCGA-KK-A6E5	CALR\|BRD2	CALR	BRD2	19	6	1	1	3	25	2	0.095	13055304	32944339	tier1	3UTR-CDS	2911	NA	0.37852

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