Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the HAMPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| DLBC | TCGA-FF-8043-01A | TCGA-FF-8043 | ASH1L|ZNF687 | ASH1L | ZNF687 | 1 | 1 | -1 | 1 | 12 | 14 | 13 | 0.015 | 155531944 | 151263191 | tier1 | 5UTR-CDS | 1531 | validated | 0.36226 |
| LUAD | TCGA-91-A4BC-01A | TCGA-91-A4BC | ASH1L|INSRR | ASH1L | INSRR | 1 | 1 | -1 | -1 | 11 | 11 | 8 | 0.62 | 155490891 | 156824095 | tier1 | Out-of-frame | 1521 | NA | 0.37451 |
| LUSC | TCGA-L3-A524-01A | TCGA-L3-A524 | ASH1L|GON4L | ASH1L | GON4L | 1 | 1 | -1 | -1 | 9 | 4 | 3 | 0.27 | 155531944 | 155786053 | tier2 | 5UTR-CDS | 1519 | NA | 0.36551 |
| OV | TCGA-24-1553-01A | TCGA-24-1553 | ASH1L|C1orf87 | ASH1L | C1orf87 | 1 | 1 | -1 | -1 | 2 | 2 | 2 | 0.86 | 155349834 | 60521110 | tier2 | Out-of-frame | 1515 | NA | 0 |
| PRAD | TCGA-EJ-5518-01A | TCGA-EJ-5518 | ASH1L|NSL1 | ASH1L | NSL1 | 1 | 1 | -1 | -1 | 11 | 4 | 4 | 3.4 | 155490891 | 212960979 | tier1 | In-frame | 1523 | NA | 0.36662 |
| SARC | TCGA-DX-AB2S-01A | TCGA-DX-AB2S | ASH1L|RC3H1 | ASH1L | RC3H1 | 1 | 1 | -1 | -1 | 6 | 2 | 2 | 0.009 | 155531944 | 173962273 | tier1 | 5UTR-5UTR | 1524 | NA | 0.36225 |
| SARC | TCGA-IW-A3M5-01A | TCGA-IW-A3M5 | ASH1L|RIT1 | ASH1L | RIT1 | 1 | 1 | -1 | -1 | 8 | 2 | 2 | 0.12 | 155307880 | 155874595 | tier1 | In-frame | 1526 | non-validated | 0.37804 |
| SARC | TCGA-DX-A1KY-01A | TCGA-DX-A1KY | ASH1L|SELL | ASH1L | SELL | 1 | 1 | -1 | -1 | 44 | 51 | 49 | 1 | 155531944 | 169665694 | tier1 | 5UTR-CDS | 1527 | NA | 0.38021 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | ASH1L|SLC28A3 | ASH1L | SLC28A3 | 1 | 9 | -1 | -1 | 5 | 15 | 14 | 0.17 | 155531944 | 86909190 | tier1 | 5UTR-CDS | 1528 | NA | 0.36022 |
| UCEC | TCGA-A5-A3LP-01A | TCGA-A5-A3LP | ASH1L|IQGAP3 | ASH1L | IQGAP3 | 1 | 1 | -1 | -1 | 25 | 18 | 15 | 2.6 | 155531944 | 156501039 | tier1 | 5UTR-CDS | 1522 | NA | 0.36549 |
| ACC | TCGA-OR-A5J1-01A | TCGA-OR-A5J1 | MLL|ATP5L | MLL | ATP5L | 11 | 11 | 1 | 1 | 14 | 6 | 3 | 3.2 | 118353210 | 118301739 | tier1 | In-frame | 10444 | NA | 0.38045 |
| BLCA | TCGA-BT-A2LA-01A | TCGA-BT-A2LA | MLL|SLC22A10 | MLL | SLC22A10 | 11 | 11 | 1 | 1 | 2 | 3 | 3 | 0.11 | 118345030 | 63137095 | tier2 | CDS-3UTR | 10458 | non-validated | 0.38045 |
| CESC | TCGA-C5-A1M7-01A | TCGA-C5-A1M7 | MLL|CD86 | MLL | CD86 | 11 | 3 | 1 | 1 | 2 | 1 | 1 | 0.46 | 118355690 | 121838285 | tier3 | Out-of-frame | 10445 | NA | 0.38615 |
| LAML | TCGA-AB-2834-03A | TCGA-AB-2834 | MLL|ELL | MLL | ELL | 11 | 19 | 1 | -1 | 14 | 22 | 18 | 0.2 | 118353210 | 18576728 | tier1 | In-frame | 10446 | NA | 0.3802 |
| LAML | TCGA-AB-2844-03A | TCGA-AB-2844 | MLL|ELL | MLL | ELL | 11 | 19 | 1 | -1 | 25 | 14 | 13 | 0.2 | 118355029 | 18583692 | tier1 | In-frame | 10447 | NA | 0.3802 |
| LAML | TCGA-AB-2911-03A | TCGA-AB-2911 | MLL|ELL | MLL | ELL | 11 | 19 | 1 | -1 | 6 | 10 | 10 | 0.2 | 118355690 | 18569139 | tier1 | In-frame | 10448 | NA | 0.3802 |
| LAML | TCGA-AB-2832-03A | TCGA-AB-2832 | MLL|MLLT10 | MLL | MLLT10 | 11 | 10 | 1 | 1 | 6 | 7 | 7 | 0.87 | 118355029 | 21959378 | tier1 | In-frame | 10451 | NA | 0.38046 |
| LAML | TCGA-AB-2842-03A | TCGA-AB-2842 | MLL|MLLT10 | MLL | MLLT10 | 11 | 10 | 1 | 1 | 4 | 15 | 15 | 0.87 | 118353210 | 21875223 | tier1 | In-frame | 10452 | NA | 0.38046 |
| LAML | TCGA-AB-2985-03A | TCGA-AB-2985 | MLL|MLLT10 | MLL | MLLT10 | 11 | 10 | 1 | 1 | 4 | 9 | 9 | 0.87 | 118355690 | 21940602 | tier1 | In-frame | 10453 | non-validated | 0.38046 |
| LAML | TCGA-AB-3005-03A | TCGA-AB-3005 | MLL|MLLT10 | MLL | MLLT10 | 11 | 10 | 1 | 1 | 7 | 9 | 9 | 0.87 | 118350953 | 22002701 | tier1 | In-frame | 10454 | validated | 0.38046 |
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