Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the HAMPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LAML | TCGA-AB-2910-03A | TCGA-AB-2910 | KAT6A|CREBBP | KAT6A | CREBBP | 8 | 16 | -1 | -1 | 6 | 13 | 13 | 0.000001 | 41794774 | 3901010 | tier1 | In-frame | 8526 | NA | 0.38552 |
| LUSC | TCGA-43-8115-01A | TCGA-43-8115 | TRAP1|CREBBP | TRAP1 | CREBBP | 16 | 16 | -1 | -1 | 3 | 2 | 2 | 0.25 | 3740828 | 3799684 | tier1 | Out-of-frame | 18564 | NA | 0 |
| UCEC | TCGA-EY-A54A-01A | TCGA-EY-A54A | NSUN5|BAZ1B | NSUN5 | BAZ1B | 7 | 7 | -1 | -1 | 7 | 2 | 2 | 0.49 | 72721391 | 72865324 | tier1 | Out-of-frame | 11815 | NA | 0.36915 |
| LUSC | TCGA-60-2721-01A | TCGA-60-2721 | DIP2C|ZMYND11 | DIP2C | ZMYND11 | 10 | 10 | -1 | 1 | 4 | 1 | 1 | 0.35 | 532399 | 225934 | tier4 | CDS-5UTR | 4849 | NA | 0.37305 |
| UCEC | TCGA-EY-A2OQ-01A | TCGA-EY-A2OQ | DIP2C|ZMYND11 | DIP2C | ZMYND11 | 10 | 10 | -1 | 1 | 2 | 2 | 2 | 0.35 | 735434 | 225934 | tier2 | CDS-5UTR | 4850 | NA | 0.37305 |
| KIRP | TCGA-B9-A44B-01A | TCGA-B9-A44B | PRUNE2|HDAC9 | PRUNE2 | HDAC9 | 9 | 7 | -1 | 1 | 2 | 2 | 2 | 0.6 | 79318253 | 18684294 | tier2 | Out-of-frame | 13671 | validated | 0.36468 |
| SKCM | TCGA-EB-A44R-06A | TCGA-EB-A44R | MICALL2|HDAC9 | MICALL2 | HDAC9 | 7 | 7 | -1 | 1 | 7 | 9 | 9 | 0.15 | 1484288 | 18684294 | tier1 | Out-of-frame | 10350 | NA | 0.3678 |
| SKCM | TCGA-DA-A1HW-06A | TCGA-DA-A1HW | TNRC18|HDAC9 | TNRC18 | HDAC9 | 7 | 7 | -1 | 1 | 6 | 2 | 2 | 0.14 | 5401528 | 18535885 | tier1 | CDS-5UTR | 18374 | non-validated | 0 |
| UCEC | TCGA-EO-A3AS-01A | TCGA-EO-A3AS | ELMO1|HDAC9 | ELMO1 | HDAC9 | 7 | 7 | -1 | 1 | 11 | 7 | 7 | 2.3 | 37488278 | 18535885 | tier1 | 5UTR-5UTR | 5522 | NA | 0.37476 |
| UCEC | TCGA-EO-A3AS-01A | TCGA-EO-A3AS | ITGB5|HDAC9 | ITGB5 | HDAC9 | 3 | 7 | -1 | 1 | 4 | 7 | 5 | 0.73 | 124487860 | 18535885 | tier1 | CDS-5UTR | 8405 | NA | 0.37606 |
| BLCA | TCGA-E7-A5KE-01A | TCGA-E7-A5KE | RPAP3|HDAC7 | RPAP3 | HDAC7 | 12 | 12 | -1 | -1 | 14 | 8 | 7 | 0.34 | 48095247 | 48196057 | tier1 | Out-of-frame | 14971 | NA | 0 |
| PRAD | TCGA-V1-A8WS-01A | TCGA-V1-A8WS | LOH12CR1|HDAC7 | LOH12CR1 | HDAC7 | 12 | 12 | 1 | -1 | 8 | 7 | 7 | 0.085 | 12510443 | 48185787 | tier1 | In-frame | 9420 | NA | 0.37819 |
| LIHC | TCGA-KR-A7K8-01A | TCGA-KR-A7K8 | RAB17|HDAC4 | RAB17 | HDAC4 | 2 | 2 | -1 | -1 | 3 | 8 | 5 | 0.18 | 238494641 | 239976529 | tier1 | Out-of-frame | 14050 | NA | 0 |
| SKCM | TCGA-D3-A3MO-06A | TCGA-D3-A3MO | PER2|HDAC4 | PER2 | HDAC4 | 2 | 2 | -1 | -1 | 2 | 2 | 1 | 0.048 | 239157703 | 240037006 | tier2 | In-frame | 12614 | non-validated | 0.3824 |
| BRCA | TCGA-E9-A248-01A | TCGA-E9-A248 | PLD3|SIRT2 | PLD3 | SIRT2 | 19 | 19 | 1 | -1 | 9 | 14 | 10 | 0.046 | 40854675 | 39384507 | tier1 | 5UTR-CDS | 12982 | NA | 0.363 |
| KIRC | TCGA-B0-5116-01A | TCGA-B0-5116 | HNRNPL|SIRT2 | HNRNPL | SIRT2 | 19 | 19 | -1 | -1 | 11 | 17 | 16 | 0.15 | 39337956 | 39372131 | tier1 | Out-of-frame | 7901 | NA | 0.3747 |
| UCS | TCGA-N7-A4Y8-01A | TCGA-N7-A4Y8 | PVR|SIRT2 | PVR | SIRT2 | 19 | 19 | 1 | -1 | 5 | 5 | 4 | 0.12 | 45147475 | 39372131 | tier4 | In-frame | 13970 | NA | 0 |
| UCEC | TCGA-AJ-A6NU-01A | TCGA-AJ-A6NU | TIMELESS|BAZ2A | TIMELESS | BAZ2A | 12 | 12 | -1 | -1 | 14 | 5 | 5 | 0.032 | 56843094 | 56997484 | tier1 | 5UTR-CDS | 17826 | NA | 0 |
| BRCA | TCGA-A2-A0EY-01A | TCGA-A2-A0EY | FBXL20|SIRT6 | FBXL20 | SIRT6 | 17 | 19 | -1 | -1 | 2 | 4 | 4 | 0.17 | 37557614 | 4175934 | tier2 | Out-of-frame | 6320 | non-validated | 0.35802 |
| BRCA | TCGA-A8-A084-01A | TCGA-A8-A084 | DGKD|SP140 | DGKD | SP140 | 2 | 2 | 1 | 1 | 8 | 10 | 10 | 2.5 | 234263320 | 231101798 | tier1 | Out-of-frame | 4755 | NA | 0.37003 |
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