Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the HAMPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-B5-A5OE-01A | TCGA-B5-A5OE | ZMYND8|EYA2 | ZMYND8 | EYA2 | 20 | 20 | -1 | 1 | 3 | 5 | 5 | 0.15 | 45852970 | 45700824 | tier1 | In-frame | 20345 | NA | 0 |
| UCEC | TCGA-AX-A3GI-01A | TCGA-AX-A3GI | ZMYND8|SULF2 | ZMYND8 | SULF2 | 20 | 20 | -1 | -1 | 4 | 6 | 5 | 3.3 | 45976600 | 46331414 | tier1 | In-frame | 20352 | NA | 0 |
| UCEC | TCGA-B5-A3FB-01A | TCGA-B5-A3FB | ZMYND8|TFE3 | ZMYND8 | TFE3 | 20 | X | -1 | -1 | 19 | 5 | 4 | 0.65 | 45849965 | 48896935 | tier1 | Out-of-frame | 20353 | NA | 0 |
| BLCA | TCGA-FD-A3NA-01A | TCGA-FD-A3NA | KAT2A|STAT5B | KAT2A | STAT5B | 17 | 17 | -1 | -1 | 6 | 3 | 3 | 0.013 | 40269053 | 40354826 | tier1 | Out-of-frame | 8522 | NA | 0.38396 |
| LGG | TCGA-TQ-A7RP-01A | TCGA-TQ-A7RP | HDAC5|MYO18A | HDAC5 | MYO18A | 17 | 17 | -1 | -1 | 12 | 3 | 2 | 0.01 | 42194862 | 27494039 | tier1 | CDS-5UTR | 7625 | NA | 0.37619 |
| THYM | TCGA-ZB-A961-01A | TCGA-ZB-A961 | HDAC5|SLC13A2 | HDAC5 | SLC13A2 | 17 | 17 | -1 | 1 | 12 | 6 | 6 | 0.003 | 42188097 | 26816232 | tier1 | Out-of-frame | 7626 | NA | 0.37339 |
| BLCA | TCGA-GC-A3RD-01A | TCGA-GC-A3RD | HDAC1|PEPD | HDAC1 | PEPD | 1 | 19 | 1 | -1 | 5 | 5 | 5 | 0.53 | 32793278 | 33904549 | tier4 | Out-of-frame | 7614 | NA | 0.37233 |
| BRCA | TCGA-BH-A0B9-01A | TCGA-BH-A0B9 | HDAC1|KPNA6 | HDAC1 | KPNA6 | 1 | 1 | 1 | 1 | 12 | 8 | 8 | 0.56 | 32790154 | 32620189 | tier1 | In-frame | 7612 | validated | 0.37276 |
| GBM | TCGA-27-2519-01A | TCGA-27-2519 | HDAC1|SERINC2 | HDAC1 | SERINC2 | 1 | 1 | 1 | 1 | 3 | 2 | 1 | 2 | 32768334 | 31883232 | tier2 | In-frame | 7615 | NA | 0.368 |
| LGG | TCGA-HT-7860-01A | TCGA-HT-7860 | HDAC1|LRRC42 | HDAC1 | LRRC42 | 1 | 1 | 1 | 1 | 4 | 5 | 5 | 0.53 | 32757819 | 54417659 | tier1 | CDS-5UTR | 7613 | NA | 0.3697 |
| STAD | TCGA-BR-A4J1-01A | TCGA-BR-A4J1 | HDAC1|EIF3I | HDAC1 | EIF3I | 1 | 1 | 1 | 1 | 24 | 352 | 332 | 1.3 | 32768334 | 32694100 | tier1 | In-frame | 7611 | NA | 0.37671 |
| BLCA | TCGA-4Z-AA87-01A | TCGA-4Z-AA87 | ASH1L|GON4L | ASH1L | GON4L | 1 | 1 | -1 | -1 | 8 | 4 | 4 | 0.27 | 155531944 | 155730432 | tier1 | 5UTR-CDS | 1518 | NA | 0.36551 |
| BLCA | TCGA-DK-A6B1-01A | TCGA-DK-A6B1 | ASH1L|SPRR2G | ASH1L | SPRR2G | 1 | 1 | -1 | -1 | 2 | 3 | 2 | 0.83 | 155408118 | 153122607 | tier3 | CDS-5UTR | 1529 | NA | 0.35939 |
| BLCA | TCGA-XF-AAMY-01A | TCGA-XF-AAMY | ASH1L|UBQLN4 | ASH1L | UBQLN4 | 1 | 1 | -1 | -1 | 7 | 5 | 5 | 1.5 | 155531944 | 156021648 | tier1 | 5UTR-CDS | 1530 | NA | 0.37296 |
| BRCA | TCGA-A8-A07I-01A | TCGA-A8-A07I | ASH1L|AIM2 | ASH1L | AIM2 | 1 | 1 | -1 | -1 | 7 | 3 | 2 | 0.65 | 155531944 | 159043309 | tier1 | 5UTR-5UTR | 1513 | non-validated | 0.36049 |
| BRCA | TCGA-A7-A26G-01A | TCGA-A7-A26G | ASH1L|ARHGEF2 | ASH1L | ARHGEF2 | 1 | 1 | -1 | -1 | 22 | 13 | 11 | 0.54 | 155408118 | 155952991 | tier1 | CDS-5UTR | 1514 | non-validated | 0.38201 |
| BRCA | TCGA-AR-A0TT-01A | TCGA-AR-A0TT | ASH1L|FAM78B | ASH1L | FAM78B | 1 | 1 | -1 | -1 | 11 | 17 | 16 | 0.016 | 155365250 | 166040000 | tier1 | Out-of-frame | 1516 | NA | 0.36164 |
| BRCA | TCGA-A8-A090-01A | TCGA-A8-A090 | ASH1L|GATAD2B | ASH1L | GATAD2B | 1 | 1 | -1 | -1 | 3 | 2 | 2 | 0.92 | 155490891 | 153800824 | tier1 | CDS-5UTR | 1517 | NA | 0.37119 |
| BRCA | TCGA-AN-A0XV-01A | TCGA-AN-A0XV | ASH1L|GPATCH4 | ASH1L | GPATCH4 | 1 | 1 | -1 | -1 | 2 | 1 | 1 | 0.24 | 155317447 | 156568896 | tier3 | CDS-5UTR | 1520 | NA | 0.36086 |
| CESC | TCGA-EA-A5O9-01A | TCGA-EA-A5O9 | ASH1L|RGS7 | ASH1L | RGS7 | 1 | 1 | -1 | -1 | 21 | 2 | 2 | 0.087 | 155447677 | 240979715 | tier1 | Out-of-frame | 1525 | NA | 0.37842 |
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