Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | AC010859.1|MATN2 | AC010859.1 | MATN2 | 8 | 8 | 1 | 1 | 41 | 28 | 26 | 0.28 | 97797558 | 98943181 | tier1 | In-frame | 159 | validated | 0.35932 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | AC010859.1|KSR2 | AC010859.1 | KSR2 | 8 | 12 | 1 | -1 | 6 | 6 | 5 | 0.028 | 97657630 | 118298236 | tier1 | 5UTR-CDS | 158 | NA | 0.36506 |
| LUSC | TCGA-18-3421-01A | TCGA-18-3421 | AC010859.1|COL14A1 | AC010859.1 | COL14A1 | 8 | 8 | 1 | 1 | 2 | 2 | 2 | 1.6 | 97657630 | 121379410 | tier3 | 5UTR-CDS | 156 | NA | 0.36137 |
| BRCA | TCGA-C8-A12Z-01A | TCGA-C8-A12Z | AC010859.1|OC90 | AC010859.1 | OC90 | 8 | 8 | 1 | -1 | 5 | 4 | 4 | 1.5 | 97657630 | 133067320 | tier1 | 5UTR-5UTR | 160 | NA | 0.3265 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | AC010859.1|CORO1C | AC010859.1 | CORO1C | 8 | 12 | 1 | -1 | 6 | 1 | 1 | 0.077 | 97657630 | 109095099 | tier2 | 5UTR-5UTR | 157 | NA | 0.35417 |
| ESCA | TCGA-2H-A9GG-01A | TCGA-2H-A9GG | DECR1|STAU2 | DECR1 | STAU2 | 8 | 8 | 1 | -1 | 18 | 262 | 235 | 0.89 | 91013789 | 74464554 | tier1 | Out-of-frame | 4685 | NA | 0.35418 |
| BRCA | TCGA-AR-A1AN-01A | TCGA-AR-A1AN | SFRP1|ARMC5 | SFRP1 | ARMC5 | 8 | 16 | -1 | 1 | 8 | 9 | 9 | 0.75 | 41160980 | 31473243 | tier1 | In-frame | 15761 | NA | 0 |
| BLCA | TCGA-FD-A3SR-01A | TCGA-FD-A3SR | IKBKB|UNC5D | IKBKB | UNC5D | 8 | 8 | 1 | 1 | 25 | 11 | 10 | 0.95 | 42129723 | 35406810 | tier1 | Out-of-frame | 8147 | NA | 0.38612 |
| BRCA | TCGA-EW-A6SB-01A | TCGA-EW-A6SB | IKBKB|ANK1 | IKBKB | ANK1 | 8 | 8 | 1 | -1 | 6 | 2 | 2 | 0.076 | 42129723 | 41566493 | tier1 | In-frame | 8142 | NA | 0.38887 |
| BRCA | TCGA-AR-A2LK-01A | TCGA-AR-A2LK | IKBKB|FADD | IKBKB | FADD | 8 | 11 | 1 | 1 | 39 | 23 | 20 | 2.5 | 42166543 | 70052239 | tier1 | Out-of-frame | 8144 | non-validated | 0.38536 |
| BRCA | TCGA-XX-A899-01A | TCGA-XX-A899 | IKBKB|RP11-930P14.1 | IKBKB | RP11-930P14.1 | 8 | 8 | 1 | 1 | 50 | 19 | 17 | 0.41 | 42147791 | 41521605 | tier4 | Out-of-frame | 8146 | NA | 0.38111 |
| LUSC | TCGA-96-8170-01A | TCGA-96-8170 | IKBKB|ANK1 | IKBKB | ANK1 | 8 | 8 | 1 | -1 | 12 | 3 | 3 | 0.076 | 42129723 | 41615655 | tier1 | In-frame | 8141 | NA | 0.38887 |
| PAAD | TCGA-HZ-A77P-01A | TCGA-HZ-A77P | IKBKB|ANK1 | IKBKB | ANK1 | 8 | 8 | 1 | -1 | 8 | 6 | 5 | 0.076 | 42129723 | 41591587 | tier1 | In-frame | 8143 | NA | 0.38887 |
| PAAD | TCGA-HZ-A77P-01A | TCGA-HZ-A77P | IKBKB|LETM2 | IKBKB | LETM2 | 8 | 8 | 1 | 1 | 8 | 13 | 13 | 0.25 | 42129723 | 38257790 | tier1 | In-frame | 8145 | NA | 0.38267 |
| HNSC | TCGA-DQ-7589-01A | TCGA-DQ-7589 | PLAT|SUPT16H | PLAT | SUPT16H | 8 | 14 | -1 | -1 | 2 | 35 | 35 | 0.13 | 42032755 | 21829491 | tier3 | 3UTR-CDS | 12947 | NA | 0.38358 |
| BRCA | TCGA-BH-A0HL-01A | TCGA-BH-A0HL | PLAT|AC011333.1 | PLAT | AC011333.1 | 8 | 5 | -1 | 1 | 2 | 14 | 13 | 0.006 | 42032755 | 173473096 | tier3 | NA | 12945 | NA | 0.3724 |
| SKCM | TCGA-EB-A4IQ-01A | TCGA-EB-A4IQ | PLAT|C12orf66 | PLAT | C12orf66 | 8 | 12 | -1 | -1 | 63 | 131 | 120 | 0.074 | 42065012 | 64609743 | tier1 | 5UTR-CDS | 12946 | NA | 0 |
| LUAD | TCGA-44-6775-01C | TCGA-44-6775 | STK3|AC010859.1 | STK3 | AC010859.1 | 8 | 8 | -1 | 1 | 7 | 26 | 25 | 2.6 | 99608260 | 97797092 | tier1 | CDS-5UTR | 17071 | non-validated | 0 |
| CESC | TCGA-MA-AA43-01A | TCGA-MA-AA43 | STK3|SLC26A7 | STK3 | SLC26A7 | 8 | 8 | -1 | 1 | 2 | 1 | 1 | 0.048 | 99538970 | 92231118 | tier3 | CDS-5UTR | 17076 | NA | 0 |
| BLCA | TCGA-DK-A1A6-01A | TCGA-DK-A1A6 | STK3|MRPL48 | STK3 | MRPL48 | 8 | 11 | -1 | 1 | 8 | 19 | 16 | 0.74 | 99837743 | 73516072 | tier1 | Out-of-frame | 17074 | non-validated | 0 |
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