Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 82 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AQ-A54N-01A | TCGA-AQ-A54N | HERC1|KIAA0101 | HERC1 | KIAA0101 | 15 | 15 | -1 | -1 | 19 | 14 | 10 | 2.8 | 64045157 | 64658274 | tier1 | Out-of-frame | 7708 | NA | 0.37193 |
| BRCA | TCGA-LL-A5YN-01A | TCGA-LL-A5YN | HERC1|KIAA0101 | HERC1 | KIAA0101 | 15 | 15 | -1 | -1 | 19 | 2 | 2 | 2.8 | 63970044 | 64658274 | tier1 | In-frame | 7709 | NA | 0.37193 |
| BRCA | TCGA-A2-A1G1-01A | TCGA-A2-A1G1 | HERC1|USP3 | HERC1 | USP3 | 15 | 15 | -1 | 1 | 2 | 1 | 1 | 0.031 | 63915014 | 63845914 | tier3 | In-frame | 7713 | NA | 0.37448 |
| KICH | TCGA-KL-8341-01A | TCGA-KL-8341 | HERC1|MYO5A | HERC1 | MYO5A | 15 | 15 | -1 | -1 | 5 | 4 | 4 | 1.9 | 63904450 | 52622696 | tier1 | Out-of-frame | 7710 | non-validated | 0.37921 |
| LUSC | TCGA-77-8139-01A | TCGA-77-8139 | HERC1|USP3 | HERC1 | USP3 | 15 | 15 | -1 | 1 | 2 | 2 | 1 | 0.031 | 63961737 | 63821213 | tier4 | CDS-5UTR | 7712 | NA | 0.37448 |
| PRAD | TCGA-YL-A9WH-01A | TCGA-YL-A9WH | HERC1|SNX6 | HERC1 | SNX6 | 15 | 14 | -1 | -1 | 21 | 4 | 3 | 0.53 | 64126026 | 35032381 | tier1 | 5UTR-CDS | 7711 | NA | 0.38127 |
| BRCA | TCGA-D8-A27R-01A | TCGA-D8-A27R | CTSH|RASGRF1 | CTSH | RASGRF1 | 15 | 15 | -1 | -1 | 12 | 15 | 13 | 0.14 | 79221754 | 79254578 | tier1 | In-frame | 4406 | NA | 0.3797 |
| LUAD | TCGA-86-8056-01A | TCGA-86-8056 | CTSH|RASGRF1 | CTSH | RASGRF1 | 15 | 15 | -1 | -1 | 425 | 370 | 92 | 0.14 | 79237233 | 79320201 | tier1 | Out-of-frame | 4405 | NA | 0.3797 |
| BRCA | TCGA-E2-A1LE-01A | TCGA-E2-A1LE | CD276|PARP16 | CD276 | PARP16 | 15 | 15 | 1 | -1 | 4 | 5 | 4 | 1.2 | 73976801 | 65563410 | tier1 | 5UTR-CDS | 3263 | NA | 0.33816 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | ATP8B4|LINGO1 | ATP8B4 | LINGO1 | 15 | 15 | -1 | -1 | 10 | 11 | 7 | 7.2 | 50330965 | 77908242 | tier1 | Out-of-frame | 1772 | NA | 0.37536 |
| BRCA | TCGA-C8-A1HI-01A | TCGA-C8-A1HI | ATP8B4|ATPBD4 | ATP8B4 | ATPBD4 | 15 | 15 | -1 | -1 | 2 | 4 | 4 | 0.48 | 50330965 | 35674117 | tier3 | Out-of-frame | 1771 | NA | 0.34997 |
| PRAD | TCGA-EJ-7330-01A | TCGA-EJ-7330 | ATP8B4|OCA2 | ATP8B4 | OCA2 | 15 | 15 | -1 | -1 | 3 | 6 | 5 | 2.2 | 50168475 | 28327041 | tier1 | CDS-5UTR | 1773 | NA | 0.34023 |
| PRAD | TCGA-CH-5765-01A | TCGA-CH-5765 | SLC30A4|PDE2A | SLC30A4 | PDE2A | 15 | 11 | -1 | -1 | 6 | 4 | 4 | 1.1 | 45803336 | 72342183 | tier1 | NA | 16142 | NA | 0 |
| PRAD | TCGA-CH-5738-01A | TCGA-CH-5738 | SLC30A4|RP11-744N12.3 | SLC30A4 | RP11-744N12.3 | 15 | 11 | -1 | -1 | 6 | 2 | 2 | 0.49 | 45814162 | 128552354 | tier1 | CDS-3UTR | 16143 | NA | 0 |
| BRCA | TCGA-E9-A228-01A | TCGA-E9-A228 | SGK3|TRIM55 | SGK3 | TRIM55 | 8 | 8 | 1 | 1 | 5 | 5 | 3 | 0.13 | 67602995 | 67047225 | tier1 | 5UTR-CDS | 15780 | NA | 0 |
| HNSC | TCGA-DQ-7590-01A | TCGA-DQ-7590 | SGK3|ANKS1A | SGK3 | ANKS1A | 8 | 6 | 1 | 1 | 2 | 1 | 1 | 3.3 | 67774257 | 34977682 | tier3 | NA | 15776 | NA | 0 |
| LUAD | TCGA-55-7907-01A | TCGA-55-7907 | SGK3|KRT9 | SGK3 | KRT9 | 8 | 17 | 1 | -1 | 22 | 7 | 5 | 0.34 | 67743546 | 39726472 | tier1 | In-frame | 15778 | NA | 0 |
| OV | TCGA-24-1548-01A | TCGA-24-1548 | SGK3|DNAJC5B | SGK3 | DNAJC5B | 8 | 8 | 1 | 1 | 5 | 2 | 2 | 0.71 | 67710860 | 66992612 | tier1 | In-frame | 15777 | validated | 0 |
| SKCM | TCGA-D3-A3BZ-06A | TCGA-D3-A3BZ | SGK3|NCK1 | SGK3 | NCK1 | 8 | 3 | 1 | 1 | 18 | 20 | 20 | 0.36 | 67755782 | 136667101 | tier1 | In-frame | 15779 | NA | 0 |
| LUAD | TCGA-91-A4BC-01A | TCGA-91-A4BC | PDGFRL|VPS37A | PDGFRL | VPS37A | 8 | 8 | 1 | 1 | 23 | 8 | 6 | 0.33 | 17447274 | 17132242 | tier1 | In-frame | 12530 | NA | 0.36098 |
|
Showing page 82 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.