Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-C8-A12Q-01A | TCGA-C8-A12Q | EEF2K|VWA3A | EEF2K | VWA3A | 16 | 16 | 1 | 1 | 2 | 4 | 3 | 0.25 | 22285071 | 22155568 | tier3 | CDS-5UTR | 5325 | validated | 0.3655 |
| BRCA | TCGA-OL-A66P-01A | TCGA-OL-A66P | EEF2K|VWA3A | EEF2K | VWA3A | 16 | 16 | 1 | 1 | 2 | 3 | 3 | 0.25 | 22256051 | 22149681 | tier3 | CDS-3UTR | 5327 | NA | 0.3655 |
| KIRP | TCGA-BQ-5887-01A | TCGA-BQ-5887 | EEF2K|ACSM3 | EEF2K | ACSM3 | 16 | 16 | 1 | 1 | 5 | 6 | 6 | 1.7 | 22262643 | 20781306 | tier1 | CDS-5UTR | 5322 | NA | 0.366 |
| LIHC | TCGA-G3-AAV1-01A | TCGA-G3-AAV1 | EEF2K|VWA3A | EEF2K | VWA3A | 16 | 16 | 1 | 1 | 14 | 8 | 8 | 0.25 | 22237296 | 22157557 | tier1 | CDS-5UTR | 5326 | NA | 0.3655 |
| LUSC | TCGA-77-6845-01A | TCGA-77-6845 | EEF2K|C10orf35 | EEF2K | C10orf35 | 16 | 10 | 1 | 1 | 5 | 6 | 5 | 2.4 | 22218000 | 71391236 | tier1 | 5UTR-5UTR | 5323 | NA | 0 |
| LUSC | TCGA-21-1081-01A | TCGA-21-1081 | SOLH|WHSC1L1 | SOLH | WHSC1L1 | 16 | 8 | 1 | -1 | 8 | 37 | 33 | 0.26 | 583998 | 38205733 | tier1 | 5UTR-5UTR | 16586 | NA | 0 |
| SARC | TCGA-QC-A6FX-01A | TCGA-QC-A6FX | XYLT1|FAM86A | XYLT1 | FAM86A | 16 | 16 | -1 | -1 | 7 | 18 | 17 | 0.03 | 17564291 | 5145515 | tier4 | In-frame | 20006 | NA | 0 |
| STAD | TCGA-BR-A4QI-01A | TCGA-BR-A4QI | XYLT1|SPN | XYLT1 | SPN | 16 | 16 | -1 | 1 | 2 | 5 | 5 | 1 | 17352845 | 29675016 | tier4 | CDS-5UTR | 20010 | NA | 0 |
| SARC | TCGA-IE-A4EJ-01A | TCGA-IE-A4EJ | XYLT1|ABR | XYLT1 | ABR | 16 | 17 | -1 | -1 | 3 | 5 | 5 | 0.24 | 17352845 | 1028702 | tier1 | In-frame | 20005 | NA | 0 |
| SARC | TCGA-DX-A1KU-01A | TCGA-DX-A1KU | XYLT1|GALNT6 | XYLT1 | GALNT6 | 16 | 12 | -1 | -1 | 3 | 1 | 1 | 0.2 | 17292069 | 51771151 | tier2 | In-frame | 20007 | non-validated | 0 |
| SKCM | TCGA-FS-A4F4-06A | TCGA-FS-A4F4 | XYLT1|HS3ST4 | XYLT1 | HS3ST4 | 16 | 16 | -1 | 1 | 8 | 4 | 4 | 0.14 | 17292069 | 26146933 | tier1 | In-frame | 20008 | NA | 0 |
| STAD | TCGA-BR-A4QI-01A | TCGA-BR-A4QI | XYLT1|QPRT | XYLT1 | QPRT | 16 | 16 | -1 | 1 | 2 | 11 | 11 | 0.25 | 17352845 | 29705985 | tier3 | In-frame | 20009 | NA | 0 |
| SKCM | TCGA-EE-A2MR-06A | TCGA-EE-A2MR | CSK|C15orf27 | CSK | C15orf27 | 15 | 15 | 1 | 1 | 22 | 13 | 10 | 0.25 | 75075061 | 76426509 | tier1 | 5UTR-5UTR | 4269 | NA | 0 |
| ACC | TCGA-OR-A5JC-01A | TCGA-OR-A5JC | HERC1|DAPK2 | HERC1 | DAPK2 | 15 | 15 | -1 | -1 | 2 | 3 | 3 | 0.12 | 63956669 | 64275953 | tier2 | Out-of-frame | 7706 | NA | 0.38236 |
| BLCA | TCGA-DK-A3X2-01A | TCGA-DK-A3X2 | HERC1|DAPK2 | HERC1 | DAPK2 | 15 | 15 | -1 | -1 | 4 | 4 | 2 | 0.12 | 64126026 | 64231560 | tier1 | 5UTR-CDS | 7704 | NA | 0.38236 |
| BRCA | TCGA-D8-A1JK-01A | TCGA-D8-A1JK | HERC1|DAPK2 | HERC1 | DAPK2 | 15 | 15 | -1 | -1 | 8 | 13 | 10 | 0.12 | 64126026 | 64204396 | tier1 | 5UTR-CDS | 7703 | NA | 0.38236 |
| LIHC | TCGA-NI-A8LF-01A | TCGA-NI-A8LF | HERC1|DAPK2 | HERC1 | DAPK2 | 15 | 15 | -1 | -1 | 6 | 1 | 1 | 0.12 | 64126026 | 64332466 | tier2 | 5UTR-5UTR | 7705 | NA | 0.38236 |
| STAD | TCGA-VQ-A8E2-01A | TCGA-VQ-A8E2 | HERC1|DAPK2 | HERC1 | DAPK2 | 15 | 15 | -1 | -1 | 4 | 5 | 5 | 0.12 | 63988323 | 64263760 | tier1 | Out-of-frame | 7707 | NA | 0.38236 |
| BRCA | TCGA-LL-A5YN-01A | TCGA-LL-A5YN | HERC1|CSNK1G1 | HERC1 | CSNK1G1 | 15 | 15 | -1 | -1 | 10 | 3 | 3 | 0.1 | 63970044 | 64658274 | tier1 | CDS-5UTR | 7702 | NA | 0.38168 |
| BLCA | TCGA-E7-A4IJ-01A | TCGA-E7-A4IJ | HERC1|C15orf44 | HERC1 | C15orf44 | 15 | 15 | -1 | -1 | 2 | 1 | 1 | 0.12 | 64126026 | 65877226 | tier3 | 5UTR-CDS | 7701 | NA | 0 |
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