Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AO-A03L-01A | TCGA-AO-A03L | ITGB5|PARP14 | ITGB5 | PARP14 | 3 | 3 | -1 | 1 | 14 | 6 | 6 | 1.2 | 124487860 | 122427037 | tier1 | Out-of-frame | 8406 | validated | 0.37057 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | ITGB5|SLC12A8 | ITGB5 | SLC12A8 | 3 | 3 | -1 | -1 | 3 | 4 | 4 | 0.16 | 124536468 | 124854626 | tier1 | Out-of-frame | 8407 | NA | 0.36989 |
| STAD | TCGA-BR-8373-01A | TCGA-BR-8373 | ITGB5|ZNF148 | ITGB5 | ZNF148 | 3 | 3 | -1 | -1 | 6 | 24 | 23 | 0.12 | 124527869 | 125032500 | tier1 | CDS-5UTR | 8408 | validated | 0.38135 |
| LAML | TCGA-AB-2910-03A | TCGA-AB-2910 | KAT6A|CREBBP | KAT6A | CREBBP | 8 | 16 | -1 | -1 | 6 | 13 | 13 | 0.000001 | 41794774 | 3901010 | tier1 | In-frame | 8526 | NA | 0.38552 |
| BRCA | TCGA-BH-A202-01A | TCGA-BH-A202 | KAT6A|MSR1 | KAT6A | MSR1 | 8 | 8 | -1 | -1 | 55 | 47 | 42 | 0.34 | 41905896 | 16035501 | tier1 | CDS-5UTR | 8532 | NA | 0.35117 |
| BRCA | TCGA-A8-A06T-01A | TCGA-A8-A06T | KAT6A|IKBKB | KAT6A | IKBKB | 8 | 8 | -1 | 1 | 11 | 7 | 7 | 3.6 | 41905896 | 42146152 | tier1 | In-frame | 8529 | NA | 0.38111 |
| BRCA | TCGA-AO-A03P-01A | TCGA-AO-A03P | KAT6A|IKBKB | KAT6A | IKBKB | 8 | 8 | -1 | 1 | 8 | 4 | 4 | 3.6 | 41905896 | 42162705 | tier1 | Out-of-frame | 8530 | NA | 0.38111 |
| BRCA | TCGA-E2-A15A-01A | TCGA-E2-A15A | KAT6A|ADAM2 | KAT6A | ADAM2 | 8 | 8 | -1 | -1 | 226 | 162 | 151 | 0.88 | 41905896 | 39627094 | tier1 | Out-of-frame | 8523 | NA | 0.35288 |
| BRCA | TCGA-AC-A5XU-01A | TCGA-AC-A5XU | KAT6A|KLK4 | KAT6A | KLK4 | 8 | 19 | -1 | -1 | 8 | 5 | 5 | 1.5 | 41798360 | 51412085 | tier1 | Out-of-frame | 8531 | NA | 0.34788 |
| BLCA | TCGA-K4-A6MB-01A | TCGA-K4-A6MB | KAT6A|VPS13B | KAT6A | VPS13B | 8 | 8 | -1 | 1 | 2 | 1 | 1 | 0.11 | 41838364 | 100568678 | tier2 | Out-of-frame | 8536 | NA | 0.34524 |
| LUAD | TCGA-69-8255-01A | TCGA-69-8255 | KAT6A|GOT1L1 | KAT6A | GOT1L1 | 8 | 8 | -1 | -1 | 4 | 3 | 3 | 0.037 | 41905896 | 37794575 | tier1 | In-frame | 8528 | NA | 0.33498 |
| LUAD | TCGA-69-8255-01A | TCGA-69-8255 | KAT6A|RAB11FIP1 | KAT6A | RAB11FIP1 | 8 | 8 | -1 | -1 | 6 | 2 | 2 | 0.005 | 41905896 | 37735069 | tier1 | Out-of-frame | 8533 | NA | 0.34983 |
| LUSC | TCGA-85-8666-01A | TCGA-85-8666 | KAT6A|AGPAT6 | KAT6A | AGPAT6 | 8 | 8 | -1 | 1 | 2 | 4 | 4 | 0.6 | 41832222 | 41455811 | tier2 | CDS-5UTR | 8525 | NA | 0.33523 |
| LUSC | TCGA-43-8115-01A | TCGA-43-8115 | KAT6A|CSMD1 | KAT6A | CSMD1 | 8 | 8 | -1 | -1 | 3 | 5 | 4 | 0.33 | 41905896 | 4495080 | tier1 | Out-of-frame | 8527 | NA | 0.33226 |
| PRAD | TCGA-KK-A7AW-01A | TCGA-KK-A7AW | KAT6A|TRAPPC9 | KAT6A | TRAPPC9 | 8 | 8 | -1 | -1 | 2 | 5 | 3 | 0.42 | 41905896 | 141034176 | tier2 | In-frame | 8534 | NA | 0.32815 |
| PRAD | TCGA-Y6-A9XI-01A | TCGA-Y6-A9XI | KAT6A|VDAC3 | KAT6A | VDAC3 | 8 | 8 | -1 | 1 | 8 | 2 | 2 | 0.039 | 41844973 | 42251363 | tier1 | CDS-5UTR | 8535 | NA | 0.34221 |
| BRCA | TCGA-AN-A0XT-01A | TCGA-AN-A0XT | ULK2|DOCK6 | ULK2 | DOCK6 | 17 | 19 | -1 | -1 | 12 | 20 | 18 | 1.3 | 19741814 | 11364402 | tier1 | Out-of-frame | 19229 | NA | 0 |
| BRCA | TCGA-AN-A0XT-01A | TCGA-AN-A0XT | ULK2|MBD3 | ULK2 | MBD3 | 17 | 19 | -1 | -1 | 4 | 6 | 6 | 0.15 | 19746434 | 1585213 | tier1 | Out-of-frame | 19230 | NA | 0 |
| BRCA | TCGA-AN-A0FY-01A | TCGA-AN-A0FY | TDRD3|DIAPH3 | TDRD3 | DIAPH3 | 13 | 13 | 1 | -1 | 2 | 3 | 3 | 0.042 | 61084889 | 60499004 | tier2 | In-frame | 17622 | NA | 0 |
| BRCA | TCGA-LL-A73Y-01A | TCGA-LL-A73Y | TDRD3|LHFP | TDRD3 | LHFP | 13 | 13 | 1 | -1 | 5 | 5 | 5 | 2.8 | 60971539 | 39952663 | tier1 | Out-of-frame | 17624 | NA | 0 |
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