Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-55-A491-01A | TCGA-55-A491 | EEA1|UBE2N | EEA1 | UBE2N | 12 | 12 | -1 | -1 | 27 | 15 | 13 | 1.3 | 93285405 | 93805075 | tier1 | In-frame | 5284 | NA | 0.37563 |
| SARC | TCGA-DX-A6BF-01A | TCGA-DX-A6BF | ARL1|UBE2N | ARL1 | UBE2N | 12 | 12 | -1 | -1 | 18 | 1 | 1 | 5.2 | 101801420 | 93805075 | tier2 | Out-of-frame | 1393 | NA | 0.3702 |
| LGG | TCGA-IK-7675-01A | TCGA-IK-7675 | TOPORS|ADAMTSL1 | TOPORS | ADAMTSL1 | 9 | 9 | -1 | 1 | 9 | 1 | 1 | 4.1 | 32550772 | 18826282 | tier2 | Out-of-frame | 18456 | non-validated | 0 |
| LGG | TCGA-TQ-A7RW-01A | TCGA-TQ-A7RW | UBAP1|ADAMTSL1 | UBAP1 | ADAMTSL1 | 9 | 9 | 1 | 1 | 4 | 5 | 5 | 0.068 | 34234338 | 18504827 | tier1 | In-frame | 19037 | NA | 0 |
| UCS | TCGA-ND-A4WF-01A | TCGA-ND-A4WF | DALRD3|IMPDH2 | DALRD3 | IMPDH2 | 3 | 3 | -1 | -1 | 30 | 32 | 24 | 1.4 | 49058279 | 49062235 | tier1 | 5UTR-CDS | 4542 | NA | 0.36376 |
| BRCA | TCGA-BH-A0BZ-01A | TCGA-BH-A0BZ | FBXO38|SPINK6 | FBXO38 | SPINK6 | 5 | 5 | 1 | 1 | 6 | 3 | 3 | 100 | 147796767 | 147582584 | tier1 | NA | 6354 | NA | 0.34357 |
| PRAD | TCGA-YL-A8SH-01B | TCGA-YL-A8SH | PRRC1|SPINK6 | PRRC1 | SPINK6 | 5 | 5 | 1 | 1 | 17 | 19 | 19 | 0.13 | 126853468 | 147594468 | tier1 | 5UTR-CDS | 13633 | NA | 0.3341 |
| BRCA | TCGA-A2-A0EY-01A | TCGA-A2-A0EY | MED1|TMPRSS9 | MED1 | TMPRSS9 | 17 | 19 | -1 | 1 | 33 | 35 | 32 | 0.66 | 37607291 | 2398793 | tier1 | Out-of-frame | 10163 | non-validated | 0.36007 |
| LGG | TCGA-FG-A711-01A | TCGA-FG-A711 | RASA3|KCNG2 | RASA3 | KCNG2 | 13 | 18 | -1 | 1 | 21 | 29 | 22 | 2.5 | 114817527 | 77659040 | tier1 | Out-of-frame | 14360 | NA | 0 |
| BLCA | TCGA-GC-A3RB-01A | TCGA-GC-A3RB | WDR37|TUBAL3 | WDR37 | TUBAL3 | 10 | 10 | 1 | -1 | 29 | 14 | 14 | 0.29 | 1132297 | 5443050 | tier1 | Out-of-frame | 19774 | NA | 0 |
| STAD | TCGA-BR-8059-01A | TCGA-BR-8059 | NET1|TUBAL3 | NET1 | TUBAL3 | 10 | 10 | 1 | -1 | 2 | 11 | 9 | 0.22 | 5454783 | 5437438 | tier3 | Out-of-frame | 11386 | NA | 0.3581 |
| PRAD | TCGA-J9-A52B-01A | TCGA-J9-A52B | PLXNB2|P4HTM | PLXNB2 | P4HTM | 22 | 3 | -1 | 1 | 2 | 7 | 4 | 0.15 | 50713408 | 49038871 | tier3 | 3UTR-CDS | 13073 | NA | 0.3685 |
| BRCA | TCGA-AC-A23C-01A | TCGA-AC-A23C | ARIH2|SLC25A20 | ARIH2 | SLC25A20 | 3 | 3 | 1 | -1 | 21 | 22 | 19 | 0.33 | 48956431 | 48929505 | tier1 | 5UTR-CDS | 1391 | NA | 0.37104 |
| OV | TCGA-24-1467-01A | TCGA-24-1467 | SCAP|SLC25A20 | SCAP | SLC25A20 | 3 | 3 | -1 | -1 | 4 | 4 | 3 | 1 | 47517289 | 48929505 | tier1 | 5UTR-CDS | 15379 | NA | 0 |
| BRCA | TCGA-A8-A08X-01A | TCGA-A8-A08X | SCAI|CA8 | SCAI | CA8 | 9 | 8 | -1 | -1 | 3 | 2 | 2 | 1.2 | 127762170 | 61102544 | tier1 | CDS-3UTR | 15370 | NA | 0 |
| BRCA | TCGA-D8-A27M-01A | TCGA-D8-A27M | C2orf67|ERBB4 | C2orf67 | ERBB4 | 2 | 2 | -1 | -1 | 3 | 1 | 1 | 0.19 | 210993755 | 212495319 | tier2 | Out-of-frame | 2692 | NA | 0 |
| LUSC | TCGA-58-8391-01A | TCGA-58-8391 | NCKAP5|ERBB4 | NCKAP5 | ERBB4 | 2 | 2 | -1 | -1 | 2 | 2 | 2 | 0.94 | 133887550 | 212812341 | tier2 | Out-of-frame | 11166 | NA | 0.38278 |
| PAAD | TCGA-L1-A7W4-01A | TCGA-L1-A7W4 | AGAP1|ERBB4 | AGAP1 | ERBB4 | 2 | 2 | 1 | -1 | 3 | 2 | 2 | 2.7 | 236715975 | 212289026 | tier1 | Out-of-frame | 612 | NA | 0.38896 |
| PAAD | TCGA-2J-AABR-01A | TCGA-2J-AABR | ANKMY1|GPR35 | ANKMY1 | GPR35 | 2 | 2 | -1 | 1 | 4 | 2 | 2 | 0.94 | 241492331 | 241569366 | tier1 | CDS-5UTR | 935 | NA | 0.35887 |
| LGG | TCGA-S9-A6WE-01A | TCGA-S9-A6WE | CPLX1|GAK | CPLX1 | GAK | 4 | 4 | -1 | -1 | 22 | 12 | 12 | 0.028 | 818280 | 845762 | tier4 | In-frame | 4120 | NA | 0.37929 |
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