Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| KIRP | TCGA-SX-A71V-01A | TCGA-SX-A71V | FANCC|PSIP1 | FANCC | PSIP1 | 9 | 9 | -1 | -1 | 10 | 9 | 9 | 0.55 | 97912205 | 15490122 | tier1 | In-frame | 6230 | NA | 0.36562 |
| STAD | TCGA-CG-4304-01A | TCGA-CG-4304 | KIAA1797|PSIP1 | KIAA1797 | PSIP1 | 9 | 9 | 1 | -1 | 3 | 2 | 1 | 2.6 | 20907241 | 15490122 | tier2 | Out-of-frame | 8911 | NA | 0.35408 |
| PRAD | TCGA-V1-A9OY-01A | TCGA-V1-A9OY | MLLT4|SYK | MLLT4 | SYK | 6 | 9 | 1 | 1 | 3 | 6 | 6 | 1.4 | 168227917 | 93606140 | tier1 | CDS-5UTR | 10527 | NA | 0.39293 |
| PRAD | TCGA-XQ-A8TA-01A | TCGA-XQ-A8TA | RGS3|ABCA1 | RGS3 | ABCA1 | 9 | 9 | 1 | -1 | 41 | 36 | 32 | 0.49 | 116226161 | 107602800 | tier1 | Out-of-frame | 14639 | NA | 0 |
| BRCA | TCGA-BH-A0EE-01A | TCGA-BH-A0EE | SMC5|MAMDC2 | SMC5 | MAMDC2 | 9 | 9 | 1 | 1 | 2 | 2 | 1 | 0.018 | 72939059 | 72840666 | tier3 | In-frame | 16400 | NA | 0 |
| SKCM | TCGA-ER-A19E-06A | TCGA-ER-A19E | FAM125B|MAMDC2 | FAM125B | MAMDC2 | 9 | 9 | 1 | 1 | 25 | 8 | 7 | 0.18 | 129184227 | 72833253 | tier1 | In-frame | 6026 | non-validated | 0.34874 |
| BLCA | TCGA-BT-A2LD-01A | TCGA-BT-A2LD | KIAA1429|CPA6 | KIAA1429 | CPA6 | 8 | 8 | -1 | -1 | 2 | 7 | 4 | 0.12 | 95565613 | 68536486 | tier2 | Out-of-frame | 8864 | NA | 0.33676 |
| BRCA | TCGA-A8-A09N-01A | TCGA-A8-A09N | ARFGEF1|CPA6 | ARFGEF1 | CPA6 | 8 | 8 | -1 | -1 | 12 | 3 | 3 | 1.7 | 68150970 | 68397024 | tier1 | In-frame | 1191 | NA | 0.35899 |
| BRCA | TCGA-E2-A14Y-01A | TCGA-E2-A14Y | ARFGEF1|CPA6 | ARFGEF1 | CPA6 | 8 | 8 | -1 | -1 | 39 | 30 | 29 | 1.7 | 68255399 | 68334926 | tier1 | In-frame | 1192 | NA | 0.35899 |
| PRAD | TCGA-YL-A9WY-01A | TCGA-YL-A9WY | CSPP1|CPA6 | CSPP1 | CPA6 | 8 | 8 | 1 | -1 | 87 | 21 | 21 | 1 | 67976731 | 68346475 | tier1 | Out-of-frame | 4297 | NA | 0.33814 |
| BLCA | TCGA-4Z-AA80-01A | TCGA-4Z-AA80 | KIF13A|KDM1B | KIF13A | KDM1B | 6 | 6 | -1 | 1 | 18 | 12 | 12 | 0.32 | 17987285 | 18166498 | tier1 | In-frame | 8931 | NA | 0.36572 |
| SKCM | TCGA-ER-A3EV-06A | TCGA-ER-A3EV | RNF144B|KDM1B | RNF144B | KDM1B | 6 | 6 | 1 | 1 | 3 | 5 | 5 | 0.82 | 18427916 | 18197288 | tier1 | In-frame | 14769 | NA | 0 |
| UCEC | TCGA-PG-A914-01A | TCGA-PG-A914 | AMZ2|KDM1B | AMZ2 | KDM1B | 17 | 6 | 1 | 1 | 6 | 19 | 18 | 0.092 | 66247319 | 18205768 | tier1 | In-frame | 886 | NA | 0.33202 |
| BRCA | TCGA-A8-A06Y-01A | TCGA-A8-A06Y | KIAA0368|WNK2 | KIAA0368 | WNK2 | 9 | 9 | -1 | 1 | 2 | 1 | 1 | 0.048 | 114246396 | 95991978 | tier2 | 5UTR-CDS | 8783 | NA | 0.36952 |
| LUSC | TCGA-66-2759-01A | TCGA-66-2759 | IFT74|WNK2 | IFT74 | WNK2 | 9 | 9 | 1 | 1 | 3 | 4 | 4 | 7.3 | 26962085 | 96079802 | tier1 | In-frame | 8077 | non-validated | 0.36533 |
| STAD | TCGA-HU-A4GH-01A | TCGA-HU-A4GH | FAM120A|WNK2 | FAM120A | WNK2 | 9 | 9 | 1 | 1 | 6 | 98 | 88 | 0.4 | 96261168 | 96030909 | tier1 | In-frame | 6023 | NA | 0.36606 |
| BRCA | TCGA-D8-A27R-01A | TCGA-D8-A27R | TRIM32|MELK | TRIM32 | MELK | 9 | 9 | 1 | 1 | 6 | 5 | 5 | 0.31 | 119449660 | 36607572 | tier1 | 5UTR-CDS | 18629 | NA | 0 |
| UCEC | TCGA-KP-A3VZ-01A | TCGA-KP-A3VZ | PLEKHG4B|MELK | PLEKHG4B | MELK | 5 | 9 | 1 | 1 | 39 | 37 | 3 | 0.96 | 151714 | 36674831 | tier1 | In-frame | 13024 | NA | 0.37484 |
| BLCA | TCGA-C4-A0F7-01A | TCGA-C4-A0F7 | CEP128|TSHR | CEP128 | TSHR | 14 | 14 | -1 | 1 | 4 | 1 | 1 | 0.22 | 81227781 | 81562983 | tier4 | Out-of-frame | 3534 | validated | 0.37744 |
| BRCA | TCGA-AR-A1AP-01A | TCGA-AR-A1AP | TTLL5|TSHR | TTLL5 | TSHR | 14 | 14 | 1 | 1 | 15 | 9 | 9 | 2.7 | 76286504 | 81528492 | tier1 | In-frame | 18911 | NA | 0 |
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