Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-3B-A9HR-01A | TCGA-3B-A9HR | FNDC3A|LPAR6 | FNDC3A | LPAR6 | 13 | 13 | 1 | -1 | 21 | 13 | 12 | 0.64 | 49688867 | 48991456 | tier1 | CDS-5UTR | 6602 | NA | 0.33474 |
| BRCA | TCGA-GM-A2DH-01A | TCGA-GM-A2DH | BBX|RB1 | BBX | RB1 | 3 | 13 | 1 | 1 | 29 | 13 | 11 | 0.44 | 107245245 | 48934153 | tier1 | 5UTR-CDS | 1958 | NA | 0.37489 |
| BRCA | TCGA-C8-A12K-01A | TCGA-C8-A12K | FNDC3A|RB1 | FNDC3A | RB1 | 13 | 13 | 1 | 1 | 32 | 37 | 32 | 1.1 | 49688867 | 49037867 | tier2 | In-frame | 6604 | NA | 0.37647 |
| BRCA | TCGA-BH-A18G-01A | TCGA-BH-A18G | KIAA0564|RB1 | KIAA0564 | RB1 | 13 | 13 | -1 | 1 | 2 | 7 | 7 | 0.35 | 42439872 | 48916735 | tier3 | In-frame | 8798 | NA | 0.3773 |
| BRCA | TCGA-D8-A1XJ-01A | TCGA-D8-A1XJ | RCBTB2|RB1 | RCBTB2 | RB1 | 13 | 13 | -1 | 1 | 7 | 1 | 1 | 1.9 | 49070327 | 48939030 | tier2 | In-frame | 14504 | NA | 0 |
| CESC | TCGA-C5-A3HE-01A | TCGA-C5-A3HE | FNDC3A|RB1 | FNDC3A | RB1 | 13 | 13 | 1 | 1 | 4 | 2 | 2 | 1.1 | 49551053 | 48881416 | tier1 | 5UTR-CDS | 6603 | NA | 0.37647 |
| HNSC | TCGA-D6-6827-01A | TCGA-D6-6827 | USPL1|RB1 | USPL1 | RB1 | 13 | 13 | 1 | 1 | 4 | 6 | 6 | 0.66 | 31192193 | 48916735 | tier1 | 5UTR-CDS | 19448 | NA | 0 |
| OV | TCGA-24-1469-01A | TCGA-24-1469 | SH3PXD2A|RB1 | SH3PXD2A | RB1 | 10 | 13 | -1 | 1 | 29 | 5 | 5 | 2 | 105371338 | 49039134 | tier1 | In-frame | 15840 | NA | 0 |
| LIHC | TCGA-GJ-A9DB-01A | TCGA-GJ-A9DB | PSPC1|METTL21C | PSPC1 | METTL21C | 13 | 13 | -1 | -1 | 51 | 39 | 32 | 100 | 20356526 | 103339407 | tier1 | In-frame | 13740 | NA | 0.36473 |
| LUSC | TCGA-56-6545-01A | TCGA-56-6545 | TANK|SLC38A6 | TANK | SLC38A6 | 2 | 14 | 1 | 1 | 8 | 12 | 11 | 0.47 | 162036272 | 61449226 | tier1 | In-frame | 17389 | NA | 0 |
| BRCA | TCGA-C8-A12W-01A | TCGA-C8-A12W | LRR1|KCNH5 | LRR1 | KCNH5 | 14 | 14 | 1 | -1 | 2 | 9 | 9 | 0.26 | 50065921 | 63473190 | tier2 | Out-of-frame | 9555 | NA | 0.35108 |
| BRCA | TCGA-BH-A0C7-01B | TCGA-BH-A0C7 | EPC1|PTGR2 | EPC1 | PTGR2 | 10 | 14 | -1 | 1 | 101 | 76 | 71 | 1.9 | 32635691 | 74340726 | tier1 | In-frame | 5661 | NA | 0.35542 |
| BRCA | TCGA-EW-A1P1-01A | TCGA-EW-A1P1 | CATSPERB|FBLN5 | CATSPERB | FBLN5 | 14 | 14 | -1 | -1 | 2 | 3 | 3 | 1.1 | 92174485 | 92361416 | tier3 | In-frame | 3041 | NA | 0.35855 |
| BRCA | TCGA-JL-A3YW-01A | TCGA-JL-A3YW | TC2N|FBLN5 | TC2N | FBLN5 | 14 | 14 | -1 | -1 | 4 | 1 | 1 | 1.5 | 92278656 | 92409305 | tier2 | Out-of-frame | 17569 | NA | 0 |
| BRCA | TCGA-LL-A5YO-01A | TCGA-LL-A5YO | TC2N|FBLN5 | TC2N | FBLN5 | 14 | 14 | -1 | -1 | 2 | 1 | 1 | 1.5 | 92278656 | 92361416 | tier3 | In-frame | 17570 | NA | 0 |
| LGG | TCGA-CS-4943-01A | TCGA-CS-4943 | EML1|FBLN5 | EML1 | FBLN5 | 14 | 14 | 1 | -1 | 3 | 1 | 1 | 0.032 | 100259880 | 92409305 | tier3 | Out-of-frame | 5551 | NA | 0.36266 |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | SMEK1|FBLN5 | SMEK1 | FBLN5 | 14 | 14 | -1 | -1 | 3 | 4 | 2 | 0.35 | 91975850 | 92403545 | tier1 | In-frame | 16405 | NA | 0 |
| STAD | TCGA-BR-A4QI-01A | TCGA-BR-A4QI | SMEK1|FBLN5 | SMEK1 | FBLN5 | 14 | 14 | -1 | -1 | 20 | 420 | 380 | 0.35 | 91975850 | 92361416 | tier1 | In-frame | 16407 | NA | 0 |
| UCEC | TCGA-AX-A2H4-01A | TCGA-AX-A2H4 | SMEK1|FBLN5 | SMEK1 | FBLN5 | 14 | 14 | -1 | -1 | 17 | 3 | 2 | 0.35 | 91975850 | 92361416 | tier1 | In-frame | 16406 | NA | 0 |
| PRAD | TCGA-G9-6348-01A | TCGA-G9-6348 | MAP1B|SLC27A2 | MAP1B | SLC27A2 | 5 | 15 | 1 | 1 | 4 | 5 | 2 | 1 | 71411626 | 50489697 | tier1 | In-frame | 9826 | NA | 0.36529 |
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