Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| READ | TCGA-EI-6509-01A | TCGA-EI-6509 | ARHGAP23|CCR7 | ARHGAP23 | CCR7 | 17 | 17 | 1 | -1 | 7 | 4 | 4 | 0.14 | 36584792 | 38715194 | tier1 | Out-of-frame | 1233 | NA | 0.36631 |
| ESCA | TCGA-L5-A8NG-01A | TCGA-L5-A8NG | MED24|NR1D1 | MED24 | NR1D1 | 17 | 17 | -1 | -1 | 4 | 34 | 31 | 0.11 | 38178208 | 38253656 | tier1 | In-frame | 10218 | NA | 0.36518 |
| ESCA | TCGA-2H-A9GG-01A | TCGA-2H-A9GG | HOXA10|CSN1S1 | HOXA10 | CSN1S1 | 7 | 4 | -1 | 1 | 8 | 26 | 24 | 0.31 | 27212968 | 70798262 | tier1 | CDS-5UTR | 7933 | NA | 0.37054 |
| LUAD | TCGA-86-7953-01A | TCGA-86-7953 | ZNF14|STAT5A | ZNF14 | STAT5A | 19 | 17 | -1 | 1 | 12 | 6 | 5 | 0.45 | 19843765 | 40447637 | tier2 | In-frame | 20365 | NA | 0 |
| HNSC | TCGA-D6-6515-01A | TCGA-D6-6515 | NDUFA7|PRKCG | NDUFA7 | PRKCG | 19 | 19 | -1 | 1 | 43 | 45 | 36 | 0.2 | 8381380 | 54406327 | tier1 | Out-of-frame | 11298 | NA | 0.37774 |
| LUAD | TCGA-53-A4EZ-01A | TCGA-53-A4EZ | C16orf61|PZP | C16orf61 | PZP | 16 | 12 | -1 | -1 | 10 | 4 | 4 | 0.54 | 81040339 | 9312621 | tier1 | 5UTR-CDS | 2485 | NA | 0 |
| UCEC | TCGA-AX-A3FX-01A | TCGA-AX-A3FX | ZBTB7A|MAP2K2 | ZBTB7A | MAP2K2 | 19 | 19 | -1 | -1 | 9 | 5 | 4 | 3.3 | 4053969 | 4097341 | tier1 | Out-of-frame | 20119 | NA | 0 |
| UCEC | TCGA-EO-A22X-01A | TCGA-EO-A22X | ZBTB7A|MAP2K2 | ZBTB7A | MAP2K2 | 19 | 19 | -1 | -1 | 5 | 11 | 11 | 3.3 | 4066680 | 4110653 | tier1 | 5UTR-CDS | 20120 | NA | 0 |
| LGG | TCGA-HT-A5RA-01A | TCGA-HT-A5RA | ISY1|MASP1 | ISY1 | MASP1 | 3 | 3 | -1 | -1 | 28 | 5 | 5 | 0.22 | 128875476 | 187003844 | tier1 | Out-of-frame | 8352 | NA | 0.36421 |
| HNSC | TCGA-CV-7434-01A | TCGA-CV-7434 | OPA1|ATP13A4 | OPA1 | ATP13A4 | 3 | 3 | 1 | -1 | 14 | 12 | 10 | 0.97 | 193311198 | 193177020 | tier1 | In-frame | 12033 | NA | 0.34405 |
| COAD | TCGA-AA-3660-01A | TCGA-AA-3660 | BRI3BP|IL22 | BRI3BP | IL22 | 12 | 12 | 1 | -1 | 2 | 2 | 2 | 3.3 | 125478549 | 68647274 | tier2 | CDS-5UTR | 2218 | NA | 0.34304 |
| SARC | TCGA-DX-A7ES-01A | TCGA-DX-A7ES | CAND1|IL22 | CAND1 | IL22 | 12 | 12 | 1 | -1 | 121 | 147 | 128 | 1.6 | 67686556 | 68642656 | tier1 | Out-of-frame | 2947 | NA | 0.36324 |
| LGG | TCGA-CS-4941-01A | TCGA-CS-4941 | CPSF6|PTPRB | CPSF6 | PTPRB | 12 | 12 | 1 | -1 | 1495 | 2404 | 2042 | 2.7 | 69633486 | 70975082 | tier1 | Out-of-frame | 4161 | NA | 0.37846 |
| SARC | TCGA-DX-A6BE-01A | TCGA-DX-A6BE | ARID2|PTPRB | ARID2 | PTPRB | 12 | 12 | 1 | -1 | 10 | 11 | 8 | 0.29 | 46125097 | 70933802 | tier1 | In-frame | 1364 | NA | 0.37901 |
| STAD | TCGA-CG-4475-01A | TCGA-CG-4475 | FRS2|PTPRB | FRS2 | PTPRB | 12 | 12 | 1 | -1 | 2 | 3 | 3 | 0.065 | 69864310 | 71003119 | tier3 | 5UTR-CDS | 6777 | NA | 0.38201 |
| ACC | TCGA-OR-A5K9-01A | TCGA-OR-A5K9 | ANKRD52|DYRK2 | ANKRD52 | DYRK2 | 12 | 12 | -1 | 1 | 2 | 1 | 1 | 0.065 | 56641277 | 68050886 | tier2 | In-frame | 1000 | NA | 0.37918 |
| PAAD | TCGA-HZ-A49I-01A | TCGA-HZ-A49I | PPM1H|DYRK2 | PPM1H | DYRK2 | 12 | 12 | -1 | 1 | 3 | 2 | 2 | 0.15 | 63182006 | 68050886 | tier1 | Out-of-frame | 13320 | NA | 0.37622 |
| PRAD | TCGA-ZG-A9L5-01A | TCGA-ZG-A9L5 | HEATR7A|PKMYT1 | HEATR7A | PKMYT1 | 8 | 16 | 1 | -1 | 14 | 7 | 4 | 0.12 | 145255444 | 3027032 | tier1 | In-frame | 7671 | NA | 0.38067 |
| BRCA | TCGA-E9-A1N9-01A | TCGA-E9-A1N9 | OCEL1|SMARCA4 | OCEL1 | SMARCA4 | 19 | 19 | 1 | 1 | 2 | 2 | 1 | 0.005 | 17338008 | 11094797 | tier2 | CDS-5UTR | 11995 | NA | 0.3795 |
| BRCA | TCGA-BH-A1FE-01A | TCGA-BH-A1FE | PDSS2|SMARCA4 | PDSS2 | SMARCA4 | 6 | 19 | -1 | 1 | 44 | 5 | 4 | 0.73 | 107780194 | 11094797 | tier1 | CDS-5UTR | 12573 | NA | 0.37864 |
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