Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A8-A07W-01A | TCGA-A8-A07W | KIF16B|HIPK3 | KIF16B | HIPK3 | 20 | 11 | -1 | 1 | 2 | 2 | 2 | 0.4 | 16488603 | 33368839 | tier3 | Out-of-frame | 8950 | NA | 0.38028 |
| BRCA | TCGA-E9-A1N5-01A | TCGA-E9-A1N5 | MTL5|HIPK3 | MTL5 | HIPK3 | 11 | 11 | -1 | 1 | 8 | 2 | 1 | 0.92 | 68480738 | 33373154 | tier3 | Out-of-frame | 10804 | NA | 0.38002 |
| CESC | TCGA-IR-A3LK-01A | TCGA-IR-A3LK | APIP|SLC1A2 | APIP | SLC1A2 | 11 | 11 | -1 | -1 | 6 | 4 | 4 | 0.57 | 34909840 | 35287305 | tier2 | In-frame | 1120 | NA | 0.35503 |
| PRAD | TCGA-G9-6377-01A | TCGA-G9-6377 | C11orf49|CD5 | C11orf49 | CD5 | 11 | 11 | 1 | 1 | 2 | 5 | 5 | 0.22 | 47074069 | 60882528 | tier2 | In-frame | 2386 | NA | 0 |
| LUAD | TCGA-05-4415-01A | TCGA-05-4415 | ERC1|VWF | ERC1 | VWF | 12 | 12 | 1 | -1 | 10 | 11 | 11 | 0.25 | 1372331 | 6085426 | tier1 | In-frame | 5756 | NA | 0.37266 |
| LUAD | TCGA-55-1596-01A | TCGA-55-1596 | NCAPD2|VWF | NCAPD2 | VWF | 12 | 12 | 1 | -1 | 27 | 108 | 54 | 0.012 | 6603320 | 6059049 | tier1 | 5UTR-CDS | 11148 | non-validated | 0.36799 |
| SARC | TCGA-KD-A5QS-01A | TCGA-KD-A5QS | KIAA1033|PRDM4 | KIAA1033 | PRDM4 | 12 | 12 | 1 | -1 | 3 | 2 | 2 | 0.87 | 105514982 | 108147886 | tier1 | Out-of-frame | 8820 | NA | 0.36252 |
| UCEC | TCGA-BG-A3PP-01A | TCGA-BG-A3PP | SART3|DAO | SART3 | DAO | 12 | 12 | -1 | 1 | 20 | 23 | 22 | 0.87 | 108938915 | 109278774 | tier2 | CDS-5UTR | 15317 | NA | 0 |
| LUSC | TCGA-NC-A5HJ-01A | TCGA-NC-A5HJ | C12orf65|SLC11A2 | C12orf65 | SLC11A2 | 12 | 12 | 1 | -1 | 2 | 3 | 2 | 0.045 | 123718078 | 51404549 | tier3 | 5UTR-CDS | 2450 | NA | 0 |
| GBM | TCGA-12-1597-01B | TCGA-12-1597 | AGAP2|CYP27B1 | AGAP2 | CYP27B1 | 12 | 12 | -1 | -1 | 32 | 77 | 59 | 0.12 | 58127809 | 58159980 | tier1 | Out-of-frame | 626 | NA | 0.37786 |
| LGG | TCGA-E1-A7YD-01A | TCGA-E1-A7YD | TSFM|CYP27B1 | TSFM | CYP27B1 | 12 | 12 | 1 | -1 | 262 | 140 | 122 | 0.68 | 58180945 | 58159980 | tier1 | In-frame | 18767 | NA | 0 |
| LGG | TCGA-DU-7010-01A | TCGA-DU-7010 | ZNF175|CYP27B1 | ZNF175 | CYP27B1 | 19 | 12 | 1 | -1 | 327 | 181 | 162 | 0.34 | 52085135 | 58158333 | tier1 | Out-of-frame | 20382 | NA | 0 |
| LGG | TCGA-HT-8106-01A | TCGA-HT-8106 | WDR17|LTA4H | WDR17 | LTA4H | 4 | 12 | 1 | -1 | 2 | 6 | 5 | 2 | 177017736 | 96413018 | tier3 | Out-of-frame | 19758 | NA | 0 |
| SARC | TCGA-DX-A3U5-01A | TCGA-DX-A3U5 | C12orf51|LTA4H | C12orf51 | LTA4H | 12 | 12 | -1 | -1 | 21 | 14 | 13 | 0.34 | 112819756 | 96400187 | tier1 | 5UTR-CDS | 2435 | validated | 0 |
| SARC | TCGA-DX-A23V-01A | TCGA-DX-A23V | METTL21B|LTA4H | METTL21B | LTA4H | 12 | 12 | 1 | -1 | 21 | 2 | 1 | 100 | 58166911 | 96418325 | tier2 | Out-of-frame | 10273 | NA | 0.35159 |
| BRCA | TCGA-B6-A0IK-01A | TCGA-B6-A0IK | ADIPOR2|WNT5B | ADIPOR2 | WNT5B | 12 | 12 | 1 | 1 | 7 | 2 | 2 | 0.094 | 1800357 | 1740464 | tier1 | 5UTR-5UTR | 512 | NA | 0.34983 |
| BRCA | TCGA-AO-A124-01A | TCGA-AO-A124 | SEMA4C|WNT5B | SEMA4C | WNT5B | 2 | 12 | -1 | 1 | 13 | 14 | 12 | 0.083 | 97529419 | 1740464 | tier1 | CDS-5UTR | 15563 | non-validated | 0 |
| SARC | TCGA-DX-AB36-01A | TCGA-DX-AB36 | OTOGL|TRPV4 | OTOGL | TRPV4 | 12 | 12 | 1 | -1 | 8 | 11 | 11 | 3.3 | 80717620 | 110252632 | tier1 | CDS-5UTR | 12110 | NA | 0.3715 |
| BRCA | TCGA-AO-A0J2-01A | TCGA-AO-A0J2 | DIP2A|PRR4 | DIP2A | PRR4 | 21 | 12 | 1 | -1 | 282 | 121 | 117 | 0.5 | 47910632 | 11001006 | tier1 | In-frame | 4830 | validated | 0.35675 |
| BRCA | TCGA-A8-A09T-01A | TCGA-A8-A09T | TSPAN9|PRR4 | TSPAN9 | PRR4 | 12 | 12 | 1 | -1 | 6 | 9 | 9 | 1 | 3192885 | 11001006 | tier1 | 5UTR-CDS | 18815 | NA | 0 |
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