Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| KIRC | TCGA-AK-3444-01A | TCGA-AK-3444 | CANX|PLAT | CANX | PLAT | 5 | 8 | 1 | -1 | 2 | 39 | 32 | 5 | 179157926 | 42051245 | tier3 | NA | 2953 | NA | 0.37726 |
| LGG | TCGA-DU-7013-01A | TCGA-DU-7013 | TSPAN3|PLAT | TSPAN3 | PLAT | 15 | 8 | -1 | -1 | 2 | 44 | 32 | 0.37 | 77338372 | 42051245 | tier3 | NA | 18797 | non-validated | 0 |
| PRAD | TCGA-EJ-7314-01A | TCGA-EJ-7314 | EGR1|PLAT | EGR1 | PLAT | 5 | 8 | 1 | -1 | 2 | 7 | 5 | 0.3 | 137805004 | 42051245 | tier3 | NA | 5390 | NA | 0.38656 |
| BRCA | TCGA-GM-A2DD-01A | TCGA-GM-A2DD | SNRNP48|STK3 | SNRNP48 | STK3 | 6 | 8 | 1 | -1 | 2 | 2 | 2 | 0.011 | 7594392 | 99896062 | tier4 | CDS-5UTR | 16503 | NA | 0 |
| LUSC | TCGA-68-8250-01A | TCGA-68-8250 | SPAG1|STK3 | SPAG1 | STK3 | 8 | 8 | 1 | -1 | 2 | 5 | 4 | 0.43 | 101245765 | 99719539 | tier2 | In-frame | 16646 | validated | 0 |
| BRCA | TCGA-BH-A0DG-01A | TCGA-BH-A0DG | TRIM35|GSR | TRIM35 | GSR | 8 | 8 | -1 | -1 | 2 | 1 | 1 | 0.47 | 27151597 | 30569605 | tier2 | In-frame | 18638 | validated | 0 |
| LUAD | TCGA-50-6592-01A | TCGA-50-6592 | GTF2E2|GSR | GTF2E2 | GSR | 8 | 8 | -1 | -1 | 28 | 14 | 14 | 0.68 | 30510950 | 30550572 | tier1 | Out-of-frame | 7520 | NA | 0.36041 |
| BRCA | TCGA-BH-A1FE-01A | TCGA-BH-A1FE | SCML4|TUSC3 | SCML4 | TUSC3 | 6 | 8 | -1 | 1 | 3 | 2 | 2 | 1.1 | 108093376 | 15480589 | tier1 | In-frame | 15425 | NA | 0 |
| LUAD | TCGA-44-8117-01A | TCGA-44-8117 | HIRA|ADAM2 | HIRA | ADAM2 | 22 | 8 | -1 | -1 | 11 | 7 | 4 | 1.3 | 19393309 | 39627094 | tier1 | Out-of-frame | 7782 | NA | 0.37262 |
| LUAD | TCGA-55-8094-01A | TCGA-55-8094 | MTUS1|FGL1 | MTUS1 | FGL1 | 8 | 8 | -1 | -1 | 96 | 86 | 79 | 0.13 | 17570723 | 17726513 | tier1 | In-frame | 10848 | NA | 0.35241 |
| LUAD | TCGA-55-8508-01A | TCGA-55-8508 | MTUS1|FGL1 | MTUS1 | FGL1 | 8 | 8 | -1 | -1 | 17 | 4 | 4 | 0.13 | 17570723 | 17743080 | tier1 | CDS-5UTR | 10849 | NA | 0.35241 |
| CESC | TCGA-IR-A3LI-01A | TCGA-IR-A3LI | ZNF709|MAN2B1 | ZNF709 | MAN2B1 | 19 | 19 | -1 | -1 | 183 | 117 | 103 | 6.8 | 12595469 | 12758412 | tier1 | In-frame | 20638 | NA | 0 |
| LGG | TCGA-DU-6402-01A | TCGA-DU-6402 | ABR|MAN2B1 | ABR | MAN2B1 | 17 | 19 | -1 | -1 | 37 | 24 | 23 | 0.18 | 994905 | 12776619 | tier4 | In-frame | 125 | NA | 0.35698 |
| BLCA | TCGA-DK-A2I1-01A | TCGA-DK-A2I1 | SMG9|KCNN4 | SMG9 | KCNN4 | 19 | 19 | -1 | -1 | 22 | 17 | 16 | 2.3 | 44241749 | 44271241 | tier1 | CDS-3UTR | 16427 | NA | 0 |
| UCEC | TCGA-EY-A4KR-01A | TCGA-EY-A4KR | C4orf41|KCNN4 | C4orf41 | KCNN4 | 4 | 19 | 1 | -1 | 14 | 7 | 6 | 4.4 | 184589270 | 44276287 | tier1 | In-frame | 2728 | NA | 0 |
| ACC | TCGA-OR-A5J7-01A | TCGA-OR-A5J7 | SBNO2|TULP2 | SBNO2 | TULP2 | 19 | 19 | -1 | -1 | 4 | 5 | 4 | 0.31 | 1174171 | 49392888 | tier1 | 5UTR-CDS | 15357 | NA | 0 |
| BRCA | TCGA-A2-A0EV-01A | TCGA-A2-A0EV | SCAF1|MAP4K1 | SCAF1 | MAP4K1 | 19 | 19 | 1 | -1 | 34 | 14 | 13 | 0.12 | 50161146 | 39078457 | tier1 | Out-of-frame | 15361 | NA | 0 |
| COAD | TCGA-AY-6196-01A | TCGA-AY-6196 | EPB41L2|MAP4K1 | EPB41L2 | MAP4K1 | 6 | 19 | -1 | -1 | 6 | 3 | 3 | 1.5 | 131384295 | 39078457 | tier1 | 5UTR-CDS | 5649 | NA | 0.38539 |
| BRCA | TCGA-A2-A0D0-01A | TCGA-A2-A0D0 | CLASRP|RELB | CLASRP | RELB | 19 | 19 | 1 | 1 | 12 | 23 | 22 | 0.78 | 45562622 | 45537502 | tier1 | Out-of-frame | 3756 | non-validated | 0.3658 |
| BRCA | TCGA-AO-A03O-01A | TCGA-AO-A03O | RFX3|RELB | RFX3 | RELB | 9 | 19 | -1 | 1 | 2 | 5 | 5 | 2.6 | 3395472 | 45528587 | tier2 | Out-of-frame | 14615 | NA | 0 |
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