Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-LI-A9QH-01A | TCGA-LI-A9QH | TIPIN|ATP8B4 | TIPIN | ATP8B4 | 15 | 15 | -1 | -1 | 2 | 4 | 3 | 1 | 66648977 | 50226379 | tier2 | 5UTR-CDS | 17836 | NA | 0 |
| BRCA | TCGA-BH-A0E6-01A | TCGA-BH-A0E6 | CASC4|TGM5 | CASC4 | TGM5 | 15 | 15 | 1 | -1 | 7 | 7 | 7 | 0.003 | 44630515 | 43533188 | tier1 | In-frame | 3011 | NA | 0.33829 |
| ESCA | TCGA-JY-A6FB-01A | TCGA-JY-A6FB | UBR1|TGM5 | UBR1 | TGM5 | 15 | 15 | -1 | -1 | 2 | 11 | 10 | 0.22 | 43290366 | 43552777 | tier2 | In-frame | 19139 | NA | 0 |
| LUSC | TCGA-66-2756-01A | TCGA-66-2756 | UBR1|TGM5 | UBR1 | TGM5 | 15 | 15 | -1 | -1 | 14 | 8 | 6 | 0.22 | 43276095 | 43528035 | tier1 | In-frame | 19138 | validated | 0 |
| LUSC | TCGA-63-A5MR-01A | TCGA-63-A5MR | LYSMD2|SCG3 | LYSMD2 | SCG3 | 15 | 15 | -1 | 1 | 5 | 6 | 4 | 0.21 | 52029547 | 52011605 | tier1 | Out-of-frame | 9707 | NA | 0.34064 |
| PRAD | TCGA-CH-5738-01A | TCGA-CH-5738 | RP11-744N12.3|SLC30A4 | RP11-744N12.3 | SLC30A4 | 11 | 15 | -1 | -1 | 29 | 13 | 13 | 0.49 | 128556122 | 45803482 | tier1 | 3UTR-CDS | 14948 | NA | 0 |
| BLCA | TCGA-E7-A85H-01A | TCGA-E7-A85H | NBN|RIPK2 | NBN | RIPK2 | 8 | 8 | -1 | 1 | 3 | 4 | 4 | 0.43 | 90976638 | 90796278 | tier1 | Out-of-frame | 11131 | NA | 0.39034 |
| BRCA | TCGA-OL-A6VO-01A | TCGA-OL-A6VO | OSGIN2|RIPK2 | OSGIN2 | RIPK2 | 8 | 8 | 1 | 1 | 4 | 9 | 7 | 0.39 | 90926974 | 90775057 | tier1 | Out-of-frame | 12104 | NA | 0.38619 |
| HNSC | TCGA-CV-5430-01A | TCGA-CV-5430 | OSGIN2|RIPK2 | OSGIN2 | RIPK2 | 8 | 8 | 1 | 1 | 50 | 43 | 40 | 0.39 | 90926974 | 90798821 | tier1 | In-frame | 12103 | NA | 0.38619 |
| BRCA | TCGA-BH-A0H9-01A | TCGA-BH-A0H9 | UBR5|AC010859.1 | UBR5 | AC010859.1 | 8 | 8 | -1 | 1 | 2 | 2 | 1 | 0.005 | 103269860 | 97847201 | tier3 | Out-of-frame | 19150 | NA | 0 |
| LGG | TCGA-HW-A5KJ-01A | TCGA-HW-A5KJ | GNB2L1|DECR1 | GNB2L1 | DECR1 | 5 | 8 | -1 | 1 | 2 | 15 | 3 | 0.32 | 180663934 | 91017676 | tier3 | 3UTR-5UTR | 7222 | NA | 0.37686 |
| SKCM | TCGA-D3-A2J6-06A | TCGA-D3-A2J6 | GNB2L1|DECR1 | GNB2L1 | DECR1 | 5 | 8 | -1 | 1 | 2 | 19 | 8 | 0.32 | 180663934 | 91017676 | tier3 | 3UTR-5UTR | 7221 | NA | 0.37686 |
| LUAD | TCGA-50-6673-01A | TCGA-50-6673 | RNF170|SFRP1 | RNF170 | SFRP1 | 8 | 8 | -1 | -1 | 15 | 16 | 16 | 2.3 | 42742871 | 41123008 | tier1 | Out-of-frame | 14789 | NA | 0 |
| SKCM | TCGA-ER-A42H-01A | TCGA-ER-A42H | THAP1|SFRP1 | THAP1 | SFRP1 | 8 | 8 | -1 | -1 | 2 | 3 | 2 | 0.34 | 42698167 | 41161057 | tier2 | Out-of-frame | 17757 | NA | 0 |
| BRCA | TCGA-A2-A0D1-01A | TCGA-A2-A0D1 | HOOK3|IKBKB | HOOK3 | IKBKB | 8 | 8 | 1 | 1 | 41 | 19 | 19 | 0.008 | 42798588 | 42162705 | tier1 | In-frame | 7925 | non-validated | 0.38181 |
| CESC | TCGA-MA-AA43-01A | TCGA-MA-AA43 | KRT13|PLAT | KRT13 | PLAT | 17 | 8 | -1 | -1 | 2 | 23 | 18 | 0.57 | 39657233 | 42051245 | tier3 | NA | 9124 | NA | 0.37485 |
| CESC | TCGA-EA-A5FO-01A | TCGA-EA-A5FO | KRT5|PLAT | KRT5 | PLAT | 12 | 8 | -1 | -1 | 2 | 9 | 5 | 0.07 | 52908359 | 42051245 | tier3 | NA | 9155 | NA | 0.37573 |
| CESC | TCGA-EA-A3HQ-01A | TCGA-EA-A3HQ | PERP|PLAT | PERP | PLAT | 6 | 8 | -1 | -1 | 2 | 61 | 56 | 0.67 | 138411926 | 42051245 | tier3 | NA | 12620 | NA | 0.37475 |
| CESC | TCGA-HM-A4S6-01A | TCGA-HM-A4S6 | PERP|PLAT | PERP | PLAT | 6 | 8 | -1 | -1 | 2 | 20 | 19 | 0.67 | 138411926 | 42051245 | tier4 | NA | 12621 | NA | 0.37475 |
| COAD | TCGA-F4-6805-01A | TCGA-F4-6805 | MYH9|PLAT | MYH9 | PLAT | 22 | 8 | -1 | -1 | 2 | 10 | 10 | 0.72 | 36677327 | 42051245 | tier4 | NA | 10913 | NA | 0.38591 |
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