Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A2-A0T7-01A | TCGA-A2-A0T7 | UBL3|CRISPLD2 | UBL3 | CRISPLD2 | 13 | 16 | -1 | 1 | 8 | 7 | 7 | 0.72 | 30346249 | 84900503 | tier1 | In-frame | 19122 | NA | 0 |
| LIHC | TCGA-2Y-A9H6-01A | TCGA-2Y-A9H6 | KIAA0182|CRISPLD2 | KIAA0182 | CRISPLD2 | 16 | 16 | 1 | 1 | 6 | 2 | 2 | 0.1 | 85682357 | 84888335 | tier1 | Out-of-frame | 8742 | NA | 0.36382 |
| BRCA | TCGA-BH-A0B1-01A | TCGA-BH-A0B1 | MDM1|ABCC1 | MDM1 | ABCC1 | 12 | 16 | -1 | 1 | 4 | 7 | 7 | 0.69 | 68707223 | 16108348 | tier1 | In-frame | 10115 | NA | 0.35306 |
| LUSC | TCGA-43-5670-01A | TCGA-43-5670 | IQCK|ABCC1 | IQCK | ABCC1 | 16 | 16 | 1 | 1 | 4 | 2 | 2 | 2.1 | 19746772 | 16126966 | tier1 | In-frame | 8311 | validated | 0.35047 |
| BLCA | TCGA-4Z-AA82-01A | TCGA-4Z-AA82 | KLHDC4|SLC7A5 | KLHDC4 | SLC7A5 | 16 | 16 | -1 | -1 | 21 | 8 | 8 | 0.007 | 87782279 | 87871547 | tier1 | In-frame | 9051 | NA | 0.36209 |
| SARC | TCGA-JV-A75J-01A | TCGA-JV-A75J | NUBP2|RHBDL1 | NUBP2 | RHBDL1 | 16 | 16 | 1 | 1 | 4 | 9 | 8 | 0.002 | 1833037 | 726971 | tier1 | Out-of-frame | 11849 | NA | 0.34201 |
| PAAD | TCGA-HZ-7925-01A | TCGA-HZ-7925 | HADH|ZP2 | HADH | ZP2 | 4 | 16 | 1 | -1 | 7 | 12 | 11 | 2 | 108911220 | 21214572 | tier1 | In-frame | 7582 | NA | 0.34983 |
| BLCA | TCGA-GC-A4ZW-01A | TCGA-GC-A4ZW | KIAA0430|EEF2K | KIAA0430 | EEF2K | 16 | 16 | -1 | 1 | 15 | 4 | 2 | 0.42 | 15694285 | 22291519 | tier1 | Out-of-frame | 8787 | NA | 0.36275 |
| HNSC | TCGA-CV-7247-01A | TCGA-CV-7247 | SRRM2|PRSS33 | SRRM2 | PRSS33 | 16 | 16 | 1 | -1 | 37 | 8 | 7 | 0.56 | 2810500 | 2836122 | tier1 | Out-of-frame | 16887 | NA | 0 |
| SARC | TCGA-DX-A6YR-01A | TCGA-DX-A6YR | CRYM|XYLT1 | CRYM | XYLT1 | 16 | 16 | -1 | -1 | 3 | 6 | 6 | 0.78 | 21314299 | 17451907 | tier1 | 5UTR-CDS | 4253 | NA | 0.33217 |
| LUSC | TCGA-56-8629-01A | TCGA-56-8629 | RNF40|IL21R | RNF40 | IL21R | 16 | 16 | 1 | 1 | 17 | 4 | 4 | 0.25 | 30774880 | 27441377 | tier1 | CDS-5UTR | 14841 | NA | 0 |
| BRCA | TCGA-E2-A109-01A | TCGA-E2-A109 | VPS35|SLC6A2 | VPS35 | SLC6A2 | 16 | 16 | -1 | 1 | 8 | 10 | 9 | 0.2 | 46702842 | 55690556 | tier1 | CDS-5UTR | 19645 | non-validated | 0 |
| BLCA | TCGA-XF-AAML-01A | TCGA-XF-AAML | RNF111|AQP9 | RNF111 | AQP9 | 15 | 15 | 1 | 1 | 10 | 1 | 1 | 0.62 | 59280267 | 58458872 | tier3 | 5UTR-CDS | 14729 | NA | 0 |
| LUSC | TCGA-77-8139-01A | TCGA-77-8139 | USP3|HERC1 | USP3 | HERC1 | 15 | 15 | 1 | -1 | 9 | 1 | 1 | 0.031 | 63797029 | 63955403 | tier3 | 5UTR-CDS | 19342 | NA | 0 |
| SARC | TCGA-DX-A1L4-01A | TCGA-DX-A1L4 | TMTC2|HERC1 | TMTC2 | HERC1 | 12 | 15 | 1 | -1 | 4 | 3 | 3 | 0.28 | 83081448 | 63956793 | tier1 | In-frame | 18301 | NA | 0 |
| STAD | TCGA-FP-8631-01A | TCGA-FP-8631 | VPS13C|HERC1 | VPS13C | HERC1 | 15 | 15 | -1 | -1 | 3 | 4 | 4 | 0.6 | 62232846 | 63904755 | tier1 | In-frame | 19628 | NA | 0 |
| LIHC | TCGA-RC-A6M3-01A | TCGA-RC-A6M3 | DSCR3|CTSH | DSCR3 | CTSH | 21 | 15 | -1 | -1 | 7 | 5 | 5 | 1 | 38639539 | 79231513 | tier1 | Out-of-frame | 5119 | NA | 0.3534 |
| PRAD | TCGA-J4-AATZ-01A | TCGA-J4-AATZ | IREB2|CTSH | IREB2 | CTSH | 15 | 15 | 1 | -1 | 23 | 5 | 5 | 1.7 | 78732223 | 79231513 | tier1 | In-frame | 8339 | NA | 0.35755 |
| CESC | TCGA-MA-AA41-01A | TCGA-MA-AA41 | KIAA0907|CD276 | KIAA0907 | CD276 | 1 | 15 | -1 | 1 | 19 | 7 | 7 | 0.56 | 155887290 | 74001989 | tier1 | Out-of-frame | 8809 | NA | 0.35017 |
| SARC | TCGA-SG-A849-01A | TCGA-SG-A849 | GAS7|ATP8B4 | GAS7 | ATP8B4 | 17 | 15 | -1 | -1 | 3 | 5 | 5 | 1.7 | 10101525 | 50273491 | tier1 | Out-of-frame | 6963 | NA | 0.35911 |
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