TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LUAD	TCGA-78-7159-01A	TCGA-78-7159	BPIFA1\|CLDN7	BPIFA1	CLDN7	20	17	1	-1	2	2	2	0.27	31831115	7166264	tier3	3UTR-5UTR	2154	NA	0.34955
LUAD	TCGA-80-5608-01A	TCGA-80-5608	BPIFA1\|CLDN7	BPIFA1	CLDN7	20	17	1	-1	2	2	2	0.27	31831115	7166264	tier3	3UTR-5UTR	2155	NA	0.34955
LIHC	TCGA-DD-AAE9-01A	TCGA-DD-AAE9	HSD17B11\|SPARCL1	HSD17B11	SPARCL1	4	4	-1	-1	17	15	12	0.016	88303407	88420737	tier2	CDS-5UTR	7972	NA	0.34089
LIHC	TCGA-BD-A2L6-01A	TCGA-BD-A2L6	HSD17B11\|UGT2A3	HSD17B11	UGT2A3	4	4	-1	-1	99	87	71	0.69	88312013	69798477	tier1	In-frame	7973	NA	0.34154
PRAD	TCGA-V1-A9ZI-01A	TCGA-V1-A9ZI	TUBB3\|TRPM5	TUBB3	TRPM5	16	11	1	-1	10	3	3	0.28	89989866	2439821	tier1	Out-of-frame	18929	NA	0
MESO	TCGA-YS-AA4M-01A	TCGA-YS-AA4M	TUBB3\|RSPRY1	TUBB3	RSPRY1	16	16	1	1	26	3	3	0.25	89989866	57238416	tier1	CDS-5UTR	18928	NA	0
SARC	TCGA-DX-AB2O-01A	TCGA-DX-AB2O	STYX\|DAD1	STYX	DAD1	14	14	1	-1	53	31	30	1.5	53226472	23034037	tier1	CDS-3UTR	17157	NA	0
BRCA	TCGA-AN-A0FJ-01A	TCGA-AN-A0FJ	PIM3\|CRELD2	PIM3	CRELD2	22	22	1	1	41	25	23	0.46	50355459	50320903	tier1	In-frame	12857	NA	0.35664
HNSC	TCGA-CR-7369-01A	TCGA-CR-7369	GFPT1\|NFU1	GFPT1	NFU1	2	2	-1	-1	5	1	1	0.13	69614197	69650849	tier4	In-frame	7041	NA	0.3488
KIRC	TCGA-B0-5701-01A	TCGA-B0-5701	GFPT1\|NFU1	GFPT1	NFU1	2	2	-1	-1	33	23	21	0.13	69614197	69646736	tier1	Out-of-frame	7040	NA	0.3488
LUSC	TCGA-37-3789-01A	TCGA-37-3789	GFPT1\|NFU1	GFPT1	NFU1	2	2	-1	-1	7	3	3	0.13	69590677	69623422	tier1	Out-of-frame	7039	NA	0.3488
SKCM	TCGA-GN-A266-06A	TCGA-GN-A266	GFPT1\|NFU1	GFPT1	NFU1	2	2	-1	-1	10	12	12	0.13	69614197	69633214	tier1	In-frame	7042	non-validated	0.3488
STAD	TCGA-CG-4477-01A	TCGA-CG-4477	GFPT1\|NF1	GFPT1	NF1	2	17	-1	1	11	15	13	0.32	69565030	29664837	tier1	In-frame	7038	NA	0.37263
SARC	TCGA-DX-A3LY-01B	TCGA-DX-A3LY	NTRK1\|DYNC2H1	NTRK1	DYNC2H1	1	11	1	1	6	6	5	0.38	156849949	103306671	tier1	In-frame	11838	non-validated	0.38717
BRCA	TCGA-C8-A275-01A	TCGA-C8-A275	TXNRD1\|USP30	TXNRD1	USP30	12	12	1	1	29	37	32	1.8	104682818	109505329	tier2	Out-of-frame	18995	NA	0
SARC	TCGA-DX-A48N-01A	TCGA-DX-A48N	TXNRD1\|SLC41A2	TXNRD1	SLC41A2	12	12	1	-1	54	21	19	0.18	104721449	105239752	tier1	Out-of-frame	18994	NA	0
LUSC	TCGA-33-AASB-01A	TCGA-33-AASB	TXNRD1\|GLT8D2	TXNRD1	GLT8D2	12	12	1	-1	637	436	399	0.92	104682818	104415269	tier1	CDS-5UTR	18991	NA	0
LUSC	TCGA-43-2578-01A	TCGA-43-2578	TXNRD1\|HCFC2	TXNRD1	HCFC2	12	12	1	1	54	20	19	0.047	104682818	104474524	tier1	Out-of-frame	18992	NA	0
LUSC	TCGA-98-A53A-01A	TCGA-98-A53A	TXNRD1\|LAMTOR3	TXNRD1	LAMTOR3	12	4	1	-1	11	7	5	0.049	104707095	100803224	tier1	In-frame	18993	NA	0
BRCA	TCGA-EW-A1P7-01A	TCGA-EW-A1P7	TLK1\|CAT	TLK1	CAT	2	11	-1	1	10	7	6	1.6	171974249	34470739	tier1	In-frame	17854	NA	0

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