Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 299 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-B6-A0IQ-01A | TCGA-B6-A0IQ | ESRRG|ACBD3 | ESRRG | ACBD3 | 1 | 1 | -1 | -1 | 3 | 1 | 1 | 2.5 | 216850418 | 226353701 | tier3 | In-frame | 5837 | non-validated | 0.36577 |
| ACC | TCGA-OR-A5KY-01A | TCGA-OR-A5KY | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 277 | 151 | 139 | 0.08 | 124882665 | 125263132 | tier1 | Out-of-frame | 11261 | NA | 0.37966 |
| BRCA | TCGA-B6-A0X1-01A | TCGA-B6-A0X1 | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 7 | 14 | 14 | 0.08 | 124904503 | 125302253 | tier1 | In-frame | 11256 | NA | 0.37966 |
| ESCA | TCGA-2H-A9GN-01A | TCGA-2H-A9GN | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 20 | 116 | 100 | 0.08 | 125020111 | 125271049 | tier1 | 5UTR-CDS | 11252 | NA | 0.37966 |
| ESCA | TCGA-L5-A43M-01A | TCGA-L5-A43M | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 3 | 206 | 190 | 0.08 | 125020111 | 125302253 | tier1 | 5UTR-CDS | 11259 | NA | 0.37966 |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 153 | 542 | 467 | 0.08 | 125051854 | 125302253 | tier1 | NA | 11260 | validated | 0.37966 |
| LAML | TCGA-AB-2848-03A | TCGA-AB-2848 | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 34 | 9 | 7 | 0.08 | 124968142 | 125263132 | tier1 | In-frame | 11255 | NA | 0.37966 |
| LUAD | TCGA-55-8301-01A | TCGA-55-8301 | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 4 | 10 | 10 | 0.08 | 125020111 | 125284788 | tier1 | 5UTR-CDS | 11253 | NA | 0.37966 |
| LUAD | TCGA-78-7152-01A | TCGA-78-7152 | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 18 | 37 | 36 | 0.08 | 125051854 | 125302253 | tier1 | NA | 11254 | NA | 0.37966 |
| SARC | TCGA-QQ-A8VH-01A | TCGA-QQ-A8VH | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 25 | 58 | 57 | 0.08 | 124904503 | 125302253 | tier1 | In-frame | 11262 | NA | 0.37966 |
| STAD | TCGA-CD-A4MH-01A | TCGA-CD-A4MH | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 14 | 114 | 102 | 0.08 | 125020111 | 125302253 | tier1 | 5UTR-CDS | 11257 | NA | 0.37966 |
| STAD | TCGA-VQ-A91Y-01A | TCGA-VQ-A91Y | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 5 | 142 | 130 | 0.08 | 124979693 | 125302253 | tier1 | In-frame | 11263 | NA | 0.37966 |
| UCEC | TCGA-E6-A8L9-01A | TCGA-E6-A8L9 | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 34 | 40 | 36 | 0.08 | 125051854 | 125279814 | tier1 | NA | 11258 | NA | 0.37966 |
| BRCA | TCGA-AC-A3EH-01A | TCGA-AC-A3EH | NCOR2|ITGB5 | NCOR2 | ITGB5 | 12 | 3 | -1 | -1 | 18 | 16 | 16 | 1.4 | 125002686 | 124528003 | tier1 | NA | 11246 | NA | 0.38176 |
| LUAD | TCGA-97-8174-01A | TCGA-97-8174 | NCOR2|PGC | NCOR2 | PGC | 12 | 6 | -1 | -1 | 2 | 1 | 1 | 0.035 | 124809926 | 41715135 | tier3 | NA | 11249 | NA | 0.37655 |
| OV | TCGA-13-A5FT-01A | TCGA-13-A5FT | NCOR2|PIP4K2B | NCOR2 | PIP4K2B | 12 | 17 | -1 | -1 | 10 | 68 | 63 | 0.012 | 125051854 | 36943173 | tier1 | NA | 11250 | NA | 0.38025 |
| DLBC | TCGA-FA-A7DS-01A | TCGA-FA-A7DS | NCOR2|MORN3 | NCOR2 | MORN3 | 12 | 12 | -1 | -1 | 12 | 7 | 7 | 0.44 | 124979693 | 122097254 | tier1 | Out-of-frame | 11247 | NA | 0.37581 |
| GBM | TCGA-06-0878-01A | TCGA-06-0878 | NCOR2|DHX37 | NCOR2 | DHX37 | 12 | 12 | -1 | -1 | 11 | 15 | 12 | 0.033 | 124950719 | 125450358 | tier1 | In-frame | 11241 | NA | 0.37961 |
| HNSC | TCGA-CR-5243-01A | TCGA-CR-5243 | NCOR2|DDX27 | NCOR2 | DDX27 | 12 | 20 | -1 | 1 | 2 | 3 | 3 | 0.067 | 124808962 | 47849303 | tier4 | NA | 11240 | NA | 0.37797 |
| KIRC | TCGA-B0-4699-01A | TCGA-B0-4699 | NCOR2|FMR1NB | NCOR2 | FMR1NB | 12 | X | -1 | 1 | 2 | 6 | 6 | 0.09 | 124882665 | 147084721 | tier3 | In-frame | 11244 | NA | 0.37412 |
|
Showing page 299 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.