Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-J2-A4AD-01A | TCGA-J2-A4AD | EPHA10|COL8A2 | EPHA10 | COL8A2 | 1 | 1 | -1 | -1 | 5 | 3 | 2 | 0.074 | 38192774 | 36581353 | tier1 | CDS-5UTR | 5666 | NA | 0.35869 |
| LUSC | TCGA-56-8082-01A | TCGA-56-8082 | KIAA2026|PHF20 | KIAA2026 | PHF20 | 9 | 20 | -1 | 1 | 25 | 3 | 3 | 1.5 | 5988345 | 34487292 | tier1 | Out-of-frame | 8921 | NA | 0.35829 |
| LGG | TCGA-DU-7014-01A | TCGA-DU-7014 | KIAA2026|CMTM7 | KIAA2026 | CMTM7 | 9 | 3 | -1 | 1 | 12 | 9 | 8 | 0.51 | 6007195 | 32483332 | tier1 | Out-of-frame | 8920 | NA | 0.34888 |
| LGG | TCGA-TM-A84I-01A | TCGA-TM-A84I | GRIN2A|RASSF8 | GRIN2A | RASSF8 | 16 | 12 | -1 | 1 | 17 | 8 | 7 | 0.23 | 10273855 | 26208212 | tier1 | CDS-5UTR | 7455 | NA | 0.38206 |
| SARC | TCGA-SI-A71O-01A | TCGA-SI-A71O | GRIN2A|MTHFD1L | GRIN2A | MTHFD1L | 16 | 6 | -1 | 1 | 3 | 3 | 2 | 0.044 | 10031816 | 151413603 | tier1 | Out-of-frame | 7454 | NA | 0.37794 |
| SKCM | TCGA-ER-A19C-06A | TCGA-ER-A19C | UPP1|NCALD | UPP1 | NCALD | 7 | 8 | 1 | -1 | 2 | 3 | 2 | 3.2 | 48148012 | 102813898 | tier4 | 3UTR-5UTR | 19277 | NA | 0 |
| SARC | TCGA-DX-A1L4-01A | TCGA-DX-A1L4 | TBK1|CDK19 | TBK1 | CDK19 | 12 | 6 | 1 | -1 | 26 | 17 | 15 | 0.017 | 64879293 | 110935869 | tier1 | In-frame | 17535 | NA | 0 |
| BRCA | TCGA-AO-A03O-01A | TCGA-AO-A03O | TBK1|ARHGAP5 | TBK1 | ARHGAP5 | 12 | 14 | 1 | 1 | 2 | 3 | 3 | 0.32 | 64849737 | 32559708 | tier4 | CDS-5UTR | 17532 | NA | 0 |
| BRCA | TCGA-AN-A0AM-01A | TCGA-AN-A0AM | TBK1|C12orf56 | TBK1 | C12orf56 | 12 | 12 | 1 | -1 | 8 | 4 | 4 | 0.25 | 64868170 | 64746836 | tier1 | Out-of-frame | 17533 | NA | 0 |
| ESCA | TCGA-VR-A8ET-01A | TCGA-VR-A8ET | TBK1|C7orf64 | TBK1 | C7orf64 | 12 | 7 | 1 | 1 | 2 | 28 | 28 | 0.47 | 64889555 | 92161718 | tier3 | Out-of-frame | 17534 | NA | 0 |
| SARC | TCGA-DX-AB35-01A | TCGA-DX-AB35 | TBK1|TMBIM4 | TBK1 | TMBIM4 | 12 | 12 | 1 | -1 | 115 | 108 | 96 | 1.2 | 64849737 | 66547228 | tier1 | Out-of-frame | 17537 | NA | 0 |
| SARC | TCGA-DX-AB35-01A | TCGA-DX-AB35 | TBK1|TMTC2 | TBK1 | TMTC2 | 12 | 12 | 1 | 1 | 13 | 47 | 40 | 0.059 | 64849737 | 83455547 | tier1 | Out-of-frame | 17538 | NA | 0 |
| SKCM | TCGA-GN-A26D-06A | TCGA-GN-A26D | TBK1|GRIP1 | TBK1 | GRIP1 | 12 | 12 | 1 | -1 | 45 | 29 | 28 | 0.6 | 64849737 | 66859202 | tier1 | Out-of-frame | 17536 | NA | 0 |
| LUSC | TCGA-NC-A5HD-01A | TCGA-NC-A5HD | CHEK2|C22orf31 | CHEK2 | C22orf31 | 22 | 22 | -1 | -1 | 5 | 2 | 2 | 100 | 29130391 | 29456831 | tier1 | Out-of-frame | 3660 | NA | 0 |
| SARC | TCGA-PC-A5DK-01A | TCGA-PC-A5DK | SLC35F3|KLHL1 | SLC35F3 | KLHL1 | 1 | 13 | 1 | -1 | 10 | 2 | 2 | 1.5 | 234367487 | 70371094 | tier1 | Out-of-frame | 16166 | NA | 0 |
| LUAD | TCGA-55-8205-01A | TCGA-55-8205 | GPR39|ZNF285 | GPR39 | ZNF285 | 2 | 19 | 1 | -1 | 3 | 3 | 3 | 2.1 | 133175471 | 44901421 | tier1 | CDS-5UTR | 7378 | NA | 0.33691 |
| LGG | TCGA-DU-7299-01A | TCGA-DU-7299 | PRKX|CLCN4 | PRKX | CLCN4 | X | X | -1 | 1 | 2 | 1 | 1 | 0.12 | 3631129 | 10126329 | tier4 | CDS-5UTR | 13577 | NA | 0.37259 |
| OV | TCGA-24-1470-01A | TCGA-24-1470 | SETD8|RILPL2 | SETD8 | RILPL2 | 12 | 12 | 1 | -1 | 14 | 16 | 15 | 0.16 | 123880979 | 123915206 | tier1 | In-frame | 15710 | NA | 0 |
| BLCA | TCGA-5N-A9KI-01A | TCGA-5N-A9KI | PTP4A2|ARFGEF2 | PTP4A2 | ARFGEF2 | 1 | 20 | -1 | 1 | 5 | 16 | 16 | 0.1 | 32403588 | 47645067 | tier1 | 5UTR-CDS | 13801 | NA | 0.36539 |
| LIHC | TCGA-G3-AAUZ-01A | TCGA-G3-AAUZ | TMPRSS2|PHF12 | TMPRSS2 | PHF12 | 21 | 17 | -1 | -1 | 3 | 6 | 6 | 0.045 | 42860321 | 27235899 | tier1 | In-frame | 18283 | NA | 0 |
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