Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-AX-A3FX-01A | TCGA-AX-A3FX | TNRC18|RNF216 | TNRC18 | RNF216 | 7 | 7 | -1 | -1 | 44 | 49 | 45 | 0.17 | 5446781 | 5681007 | tier1 | NA | 18380 | NA | 0 |
| UCEC | TCGA-B5-A3S1-01A | TCGA-B5-A3S1 | TNRC18|RNF216 | TNRC18 | RNF216 | 7 | 7 | -1 | -1 | 15 | 9 | 9 | 0.17 | 5399029 | 5765069 | tier1 | In-frame | 18381 | NA | 0 |
| SARC | TCGA-K1-A42X-01A | TCGA-K1-A42X | HHIPL1|CCNK | HHIPL1 | CCNK | 14 | 14 | 1 | 1 | 4 | 4 | 4 | 3.2 | 100111799 | 99973413 | tier1 | Out-of-frame | 7744 | NA | 0.37642 |
| PRAD | TCGA-G9-6348-01A | TCGA-G9-6348 | ATP6AP2|EIF3M | ATP6AP2 | EIF3M | X | 11 | 1 | 1 | 2 | 6 | 3 | 0.009 | 40465889 | 32611132 | tier3 | NA | 1744 | NA | 0.35894 |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | BACE2|TACR1 | BACE2 | TACR1 | 21 | 2 | 1 | -1 | 2 | 2 | 1 | 0.07 | 42629253 | 75278574 | tier3 | Out-of-frame | 1890 | non-validated | 0.36931 |
| CESC | TCGA-EK-A2PM-01A | TCGA-EK-A2PM | BACE2|SRGAP1 | BACE2 | SRGAP1 | 21 | 12 | 1 | 1 | 4 | 2 | 2 | 0.95 | 42540502 | 64377727 | tier1 | Out-of-frame | 1889 | NA | 0.37816 |
| STAD | TCGA-BR-7901-01A | TCGA-BR-7901 | BACE2|WDR81 | BACE2 | WDR81 | 21 | 17 | 1 | 1 | 41 | 115 | 92 | 0.21 | 42540502 | 1638866 | tier1 | Out-of-frame | 1891 | NA | 0.35431 |
| BRCA | TCGA-E9-A22G-01A | TCGA-E9-A22G | GABRG3|OCA2 | GABRG3 | OCA2 | 15 | 15 | 1 | -1 | 3 | 4 | 4 | 0.79 | 27271968 | 28211968 | tier1 | In-frame | 6904 | NA | 0.34219 |
| LUSC | TCGA-22-5489-01A | TCGA-22-5489 | GABRG3|OCA2 | GABRG3 | OCA2 | 15 | 15 | 1 | -1 | 2 | 1 | 1 | 0.79 | 27271968 | 28000618 | tier4 | Out-of-frame | 6903 | NA | 0.34219 |
| TGCT | TCGA-2G-AAGC-01A | TCGA-2G-AAGC | C1S|LEPREL2 | C1S | LEPREL2 | 12 | 12 | 1 | 1 | 2 | 2 | 2 | 1 | 7105434 | 6939023 | tier3 | 5UTR-CDS | 2630 | NA | 0.36437 |
| LIHC | TCGA-G3-AAUZ-01A | TCGA-G3-AAUZ | C1S|NXPH4 | C1S | NXPH4 | 12 | 12 | 1 | 1 | 31 | 34 | 30 | 0.016 | 7168181 | 57618661 | tier1 | 5UTR-CDS | 2631 | NA | 0.3629 |
| STAD | TCGA-BR-8485-01A | TCGA-BR-8485 | LIPF|CLCN3 | LIPF | CLCN3 | 10 | 4 | 1 | 1 | 2 | 9 | 1 | 0.35 | 90438568 | 170623929 | tier3 | NA | 9367 | NA | 0.36533 |
| THCA | TCGA-ET-A25M-01A | TCGA-ET-A25M | BGN|ERBB3 | BGN | ERBB3 | X | 12 | 1 | 1 | 2 | 1 | 1 | 1.8 | 152775004 | 56492035 | tier3 | 3UTR-5UTR | 2078 | NA | 0.38587 |
| LIHC | TCGA-DD-A4NB-01A | TCGA-DD-A4NB | BGN|CLCN3 | BGN | CLCN3 | X | 4 | 1 | 1 | 2 | 57 | 44 | 0.57 | 152775004 | 170623929 | tier3 | NA | 2076 | non-validated | 0.37149 |
| PAAD | TCGA-IB-7654-01A | TCGA-IB-7654 | BGN|CLCN3 | BGN | CLCN3 | X | 4 | 1 | 1 | 2 | 75 | 70 | 0.57 | 152775004 | 170623929 | tier3 | NA | 2077 | NA | 0.37149 |
| CESC | TCGA-MA-AA43-01A | TCGA-MA-AA43 | BGN|ANXA1 | BGN | ANXA1 | X | 9 | 1 | 1 | 2 | 100 | 91 | 2.3 | 152775004 | 75772570 | tier3 | 3UTR-5UTR | 2075 | NA | 0.37962 |
| HNSC | TCGA-CV-5971-01A | TCGA-CV-5971 | BGN|TTN | BGN | TTN | X | 2 | 1 | -1 | 2 | 29 | 9 | 0.017 | 152774998 | 179511286 | tier3 | NA | 2083 | NA | 0.38032 |
| HNSC | TCGA-DQ-5625-01A | TCGA-DQ-5625 | BGN|TTN | BGN | TTN | X | 2 | 1 | -1 | 2 | 6 | 2 | 0.017 | 152774998 | 179511286 | tier4 | NA | 2084 | non-validated | 0.38032 |
| BRCA | TCGA-E2-A1BD-01A | TCGA-E2-A1BD | BGN|KIAA2026 | BGN | KIAA2026 | X | 9 | 1 | -1 | 2 | 17 | 1 | 7.3 | 152775004 | 5954095 | tier3 | 3UTR-CDS | 2079 | NA | 0.36432 |
| MESO | TCGA-LK-A4NY-01A | TCGA-LK-A4NY | BGN|PTP4A2 | BGN | PTP4A2 | X | 1 | 1 | -1 | 2 | 86 | 2 | 4.1 | 152775004 | 32374561 | tier3 | 3UTR-CDS | 2080 | NA | 0.36595 |
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