Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
| Showing page 253 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-BC-4073-01B | TCGA-BC-4073 | FGB|STAT6 | FGB | STAT6 | 4 | 12 | 1 | -1 | 2 | 26 | 7 | 3.4 | 155492238 | 57496773 | tier2 | NA | 6427 | NA | 0.37956 |
| LUAD | TCGA-78-7148-01A | TCGA-78-7148 | FGB|PLEKHA5 | FGB | PLEKHA5 | 4 | 12 | 1 | 1 | 2 | 23 | 9 | 0.46 | 155492238 | 19441012 | tier3 | NA | 6426 | NA | 0.36993 |
| BRCA | TCGA-AR-A1AI-01A | TCGA-AR-A1AI | NMUR1|PDE6D | NMUR1 | PDE6D | 2 | 2 | -1 | -1 | 2 | 5 | 5 | 0.48 | 232395070 | 232603912 | tier4 | NA | 11625 | NA | 0.36514 |
| PRAD | TCGA-KK-A6E7-01A | TCGA-KK-A6E7 | CLSTN1|ANXA1 | CLSTN1 | ANXA1 | 1 | 9 | -1 | 1 | 2 | 19 | 18 | 5 | 9789086 | 75772570 | tier3 | 3UTR-5UTR | 3850 | NA | 0.37416 |
| BRCA | TCGA-AR-A0TU-01A | TCGA-AR-A0TU | CLSTN1|CTNNBIP1 | CLSTN1 | CTNNBIP1 | 1 | 1 | -1 | -1 | 85 | 112 | 105 | 0.16 | 9833330 | 9910834 | tier1 | In-frame | 3852 | NA | 0.36254 |
| LUAD | TCGA-55-8616-01A | TCGA-55-8616 | CLSTN1|CTNNBIP1 | CLSTN1 | CTNNBIP1 | 1 | 1 | -1 | -1 | 62 | 27 | 23 | 0.16 | 9809519 | 9910834 | tier1 | In-frame | 3851 | NA | 0.36254 |
| LUAD | TCGA-MP-A4SW-01A | TCGA-MP-A4SW | CLSTN1|PLEKHG5 | CLSTN1 | PLEKHG5 | 1 | 1 | -1 | -1 | 4 | 3 | 3 | 0.97 | 9833330 | 6537718 | tier1 | Out-of-frame | 3854 | NA | 0.36042 |
| PRAD | TCGA-HC-7080-01A | TCGA-HC-7080 | CLSTN1|IFFO2 | CLSTN1 | IFFO2 | 1 | 1 | -1 | -1 | 2 | 3 | 3 | 1.2 | 9883701 | 19247615 | tier3 | Out-of-frame | 3853 | NA | 0.35742 |
| BLCA | TCGA-XF-AAMW-01A | TCGA-XF-AAMW | P2RY6|MRPS35 | P2RY6 | MRPS35 | 11 | 12 | 1 | 1 | 5 | 4 | 3 | 100 | 72975694 | 27890472 | tier1 | 5UTR-CDS | 12132 | NA | 0.34768 |
| BRCA | TCGA-D8-A27N-01A | TCGA-D8-A27N | BPTF|ABCC3 | BPTF | ABCC3 | 17 | 17 | 1 | 1 | 8 | 6 | 6 | 2.1 | 65850878 | 48733193 | tier1 | Out-of-frame | 2157 | NA | 0.36311 |
| BRCA | TCGA-C8-A12P-01A | TCGA-C8-A12P | BPTF|PIP4K2B | BPTF | PIP4K2B | 17 | 17 | 1 | -1 | 58 | 26 | 24 | 0.19 | 65822453 | 36943173 | tier1 | Out-of-frame | 2164 | NA | 0.37353 |
| BLCA | TCGA-ZF-A9RE-01A | TCGA-ZF-A9RE | BPTF|TTYH2 | BPTF | TTYH2 | 17 | 17 | 1 | 1 | 3 | 6 | 6 | 1.5 | 65822453 | 72227027 | tier1 | Out-of-frame | 2174 | NA | 0.35925 |
| BRCA | TCGA-E2-A15H-01A | TCGA-E2-A15H | BPTF|CCDC40 | BPTF | CCDC40 | 17 | 17 | 1 | 1 | 23 | 7 | 5 | 1.7 | 65928135 | 78021078 | tier1 | Out-of-frame | 2159 | non-validated | 0.36117 |
| BRCA | TCGA-E2-A14V-01A | TCGA-E2-A14V | BPTF|FAM117A | BPTF | FAM117A | 17 | 17 | 1 | -1 | 55 | 71 | 60 | 0.95 | 65962772 | 47797798 | tier1 | Out-of-frame | 2160 | NA | 0.35992 |
| BRCA | TCGA-B6-A0I9-01A | TCGA-B6-A0I9 | BPTF|PITPNC1 | BPTF | PITPNC1 | 17 | 17 | 1 | 1 | 11 | 6 | 5 | 0.85 | 65850878 | 65665624 | tier1 | Out-of-frame | 2165 | NA | 0.36324 |
| BRCA | TCGA-BH-A1F6-01A | TCGA-BH-A1F6 | BPTF|PITPNC1 | BPTF | PITPNC1 | 17 | 17 | 1 | 1 | 142 | 71 | 65 | 0.85 | 65936772 | 65665624 | tier1 | In-frame | 2166 | NA | 0.36324 |
| BRCA | TCGA-GI-A2C9-01A | TCGA-GI-A2C9 | BPTF|PITPNC1 | BPTF | PITPNC1 | 17 | 17 | 1 | 1 | 36 | 12 | 12 | 0.85 | 65944422 | 65665624 | tier1 | In-frame | 2168 | non-validated | 0.36324 |
| BRCA | TCGA-3C-AALI-01A | TCGA-3C-AALI | BPTF|PLXDC1 | BPTF | PLXDC1 | 17 | 17 | 1 | -1 | 7 | 10 | 7 | 0.059 | 65962772 | 37243955 | tier1 | In-frame | 2170 | NA | 0.36106 |
| BRCA | TCGA-E9-A22D-01A | TCGA-E9-A22D | BPTF|RGS9 | BPTF | RGS9 | 17 | 17 | 1 | 1 | 241 | 244 | 176 | 0.083 | 65850878 | 63164318 | tier1 | In-frame | 2172 | NA | 0.36276 |
| ESCA | TCGA-R6-A6Y0-01B | TCGA-R6-A6Y0 | BPTF|RP11-113D6.10 | BPTF | RP11-113D6.10 | 17 | 11 | 1 | 1 | 3 | 4 | 3 | 0.34 | 65822453 | 18234628 | tier1 | CDS-3UTR | 2173 | NA | 0.35592 |
|
Showing page 253 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.