Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A8BM-01A | TCGA-DX-A8BM | PTPN9|SLC12A1 | PTPN9 | SLC12A1 | 15 | 15 | -1 | 1 | 2 | 6 | 5 | 2.3 | 75871055 | 48539534 | tier2 | In-frame | 13842 | NA | 0.36254 |
| BRCA | TCGA-EW-A1P0-01A | TCGA-EW-A1P0 | PTPN9|AGBL1 | PTPN9 | AGBL1 | 15 | 15 | -1 | 1 | 15 | 25 | 19 | 1.6 | 75801258 | 87217504 | tier1 | In-frame | 13841 | NA | 0.35883 |
| KIRC | TCGA-BP-5198-01A | TCGA-BP-5198 | COL22A1|RAD54B | COL22A1 | RAD54B | 8 | 8 | -1 | -1 | 5 | 1 | 1 | 2.4 | 139889993 | 95423543 | tier4 | In-frame | 4006 | NA | 0.37611 |
| LUAD | TCGA-55-7725-01A | TCGA-55-7725 | SDC2|CTD-3025N20.2 | SDC2 | CTD-3025N20.2 | 8 | 8 | 1 | -1 | 7 | 25 | 23 | 1.2 | 97506559 | 66447099 | tier1 | CDS-5UTR | 15462 | NA | 0 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | SDC2|LIN7A | SDC2 | LIN7A | 8 | 12 | 1 | -1 | 9 | 3 | 3 | 0.23 | 97506271 | 81283148 | tier1 | 5UTR-CDS | 15463 | NA | 0 |
| BRCA | TCGA-A2-A25B-01A | TCGA-A2-A25B | SLC38A11|RABGAP1L | SLC38A11 | RABGAP1L | 2 | 1 | -1 | 1 | 3 | 4 | 3 | 0.26 | 165765150 | 174926594 | tier1 | In-frame | 16185 | non-validated | 0 |
| OV | TCGA-24-1469-01A | TCGA-24-1469 | ANTXR1|APLF | ANTXR1 | APLF | 2 | 2 | 1 | 1 | 6 | 1 | 1 | 0.8 | 69298919 | 68804952 | tier3 | In-frame | 1042 | NA | 0.35961 |
| LUAD | TCGA-83-5908-01A | TCGA-83-5908 | SPNS1|PRKCB | SPNS1 | PRKCB | 16 | 16 | 1 | 1 | 13 | 4 | 3 | 0.051 | 28986878 | 23999829 | tier1 | In-frame | 16735 | NA | 0 |
| LGG | TCGA-HT-7689-01A | TCGA-HT-7689 | SPNS1|ZNF668 | SPNS1 | ZNF668 | 16 | 16 | 1 | -1 | 7 | 3 | 3 | 0.064 | 28989365 | 31075802 | tier1 | CDS-5UTR | 16736 | non-validated | 0 |
| BRCA | TCGA-BH-A0C0-01A | TCGA-BH-A0C0 | AGPAT2|CDC42SE1 | AGPAT2 | CDC42SE1 | 9 | 1 | -1 | -1 | 30 | 47 | 42 | 0.049 | 139571413 | 151027602 | tier1 | In-frame | 652 | NA | 0.35979 |
| SKCM | TCGA-ER-A19H-06A | TCGA-ER-A19H | FASN|LOXL4 | FASN | LOXL4 | 17 | 10 | -1 | -1 | 2 | 15 | 7 | 0.007 | 80040199 | 100022808 | tier4 | CDS-5UTR | 6264 | NA | 0.37158 |
| LIHC | TCGA-FV-A2QR-01A | TCGA-FV-A2QR | FASN|CCDC57 | FASN | CCDC57 | 17 | 17 | -1 | -1 | 33 | 42 | 13 | 0.47 | 80042911 | 80059742 | tier1 | Out-of-frame | 6263 | NA | 0.36758 |
| LUAD | TCGA-86-8359-01A | TCGA-86-8359 | FASN|ZNF595 | FASN | ZNF595 | 17 | 4 | -1 | 1 | 4 | 3 | 3 | 1.1 | 80053196 | 59323 | tier1 | Out-of-frame | 6265 | NA | 0.37264 |
| OV | TCGA-13-1512-01A | TCGA-13-1512 | FASN|CCDC57 | FASN | CCDC57 | 17 | 17 | -1 | -1 | 175 | 366 | 293 | 0.47 | 80055997 | 80059742 | tier1 | 5UTR-CDS | 6262 | NA | 0.36758 |
| ACC | TCGA-OR-A5J1-01A | TCGA-OR-A5J1 | NRG4|SCNN1D | NRG4 | SCNN1D | 15 | 1 | -1 | 1 | 5 | 1 | 1 | 1.7 | 76301541 | 1225857 | tier2 | Out-of-frame | 11750 | NA | 0.35812 |
| MESO | TCGA-TS-A8AI-01A | TCGA-TS-A8AI | NLGN1|CCDC50 | NLGN1 | CCDC50 | 3 | 3 | 1 | 1 | 3 | 3 | 3 | 0.005 | 173525622 | 191074877 | tier1 | In-frame | 11593 | NA | 0.35406 |
| SKCM | TCGA-EE-A2M6-06A | TCGA-EE-A2M6 | NLGN1|SEMA5B | NLGN1 | SEMA5B | 3 | 3 | 1 | -1 | 3 | 2 | 1 | 1.4 | 173525622 | 122632271 | tier2 | Out-of-frame | 11594 | NA | 0.3592 |
| KIRC | TCGA-CJ-6032-01A | TCGA-CJ-6032 | TM4SF1|DDX27 | TM4SF1 | DDX27 | 3 | 20 | -1 | 1 | 2 | 3 | 3 | 0.084 | 149086810 | 47849303 | tier4 | NA | 17867 | NA | 0 |
| BRCA | TCGA-AC-A2BM-01A | TCGA-AC-A2BM | MAP3K2|IWS1 | MAP3K2 | IWS1 | 2 | 2 | -1 | -1 | 21 | 16 | 12 | 1.2 | 128093446 | 128238751 | tier1 | In-frame | 9864 | NA | 0.38058 |
| BRCA | TCGA-AC-A2BM-01A | TCGA-AC-A2BM | MAP3K2|SHANK2 | MAP3K2 | SHANK2 | 2 | 11 | -1 | -1 | 2 | 3 | 3 | 0.083 | 128145028 | 70830078 | tier2 | NA | 9865 | NA | 0.38435 |
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