Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-J4-A67L-01A | TCGA-J4-A67L | MMP26|GUCY2F | MMP26 | GUCY2F | 11 | X | 1 | -1 | 2 | 1 | 1 | 1.9 | 4788571 | 108652397 | tier4 | 5UTR-CDS | 10549 | NA | 0.35851 |
| THCA | TCGA-EM-A22K-01A | TCGA-EM-A22K | GPX4|SEC63 | GPX4 | SEC63 | 19 | 6 | 1 | -1 | 2 | 3 | 1 | 100 | 1106786 | 108214782 | tier3 | NA | 7396 | NA | 0.352 |
| BRCA | TCGA-A2-A0YE-01A | TCGA-A2-A0YE | KLHL26|C19orf50 | KLHL26 | C19orf50 | 19 | 19 | 1 | 1 | 6 | 5 | 5 | 0.61 | 18775253 | 18679212 | tier1 | Out-of-frame | 9068 | NA | 0 |
| STAD | TCGA-VQ-A8PH-01A | TCGA-VQ-A8PH | KLHL26|PGPEP1 | KLHL26 | PGPEP1 | 19 | 19 | 1 | 1 | 2 | 8 | 8 | 0.23 | 18747947 | 18466705 | tier2 | CDS-5UTR | 9069 | NA | 0.36236 |
| PAAD | TCGA-2J-AAB4-01A | TCGA-2J-AAB4 | MLL2|PTPRR | MLL2 | PTPRR | 12 | 12 | -1 | -1 | 3 | 2 | 2 | 0.058 | 49453396 | 71158558 | tier2 | NA | 10462 | NA | 0.38097 |
| LUSC | TCGA-77-7337-01A | TCGA-77-7337 | MLL2|CUX2 | MLL2 | CUX2 | 12 | 12 | -1 | 1 | 7 | 1 | 1 | 0.11 | 49418361 | 111729222 | tier3 | Out-of-frame | 10460 | NA | 0.36437 |
| OV | TCGA-13-0893-01B | TCGA-13-0893 | MLL2|LMBR1L | MLL2 | LMBR1L | 12 | 12 | -1 | -1 | 3 | 3 | 3 | 0.13 | 49439703 | 49500828 | tier1 | Out-of-frame | 10461 | NA | 0.36346 |
| OV | TCGA-09-1662-01A | TCGA-09-1662 | MLL2|RHEBL1 | MLL2 | RHEBL1 | 12 | 12 | -1 | -1 | 11 | 4 | 3 | 0.83 | 49439703 | 49460818 | tier1 | In-frame | 10463 | NA | 0.37558 |
| SARC | TCGA-DX-A1L4-01A | TCGA-DX-A1L4 | TUBA1C|TMEM116 | TUBA1C | TMEM116 | 12 | 12 | 1 | -1 | 21 | 16 | 15 | 0.03 | 49658967 | 112381173 | tier1 | In-frame | 18926 | NA | 0 |
| KIRC | TCGA-B0-5691-01A | TCGA-B0-5691 | AQP2|FOXP1 | AQP2 | FOXP1 | 12 | 3 | 1 | -1 | 2 | 1 | 1 | 1.1 | 50352664 | 71007472 | tier3 | NA | 1169 | NA | 0.3579 |
| OV | TCGA-25-1877-01A | TCGA-25-1877 | AXL|ZNF565 | AXL | ZNF565 | 19 | 19 | 1 | -1 | 2 | 6 | 6 | 0.42 | 41762516 | 36686058 | tier2 | In-frame | 1839 | NA | 0.38737 |
| SARC | TCGA-DX-A6YQ-01A | TCGA-DX-A6YQ | AXL|SQSTM1 | AXL | SQSTM1 | 19 | 5 | 1 | 1 | 2 | 38 | 2 | 0.041 | 41767670 | 179250858 | tier3 | 3UTR-CDS | 1838 | NA | 0.39 |
| LUAD | TCGA-50-6594-01A | TCGA-50-6594 | SPINT2|DPF1 | SPINT2 | DPF1 | 19 | 19 | 1 | -1 | 61 | 78 | 71 | 0.15 | 38755638 | 38713348 | tier1 | Out-of-frame | 16731 | NA | 0 |
| LUAD | TCGA-55-A492-01A | TCGA-55-A492 | SPINT2|MAP4K1 | SPINT2 | MAP4K1 | 19 | 19 | 1 | -1 | 139 | 97 | 89 | 0.049 | 38781215 | 39087777 | tier1 | In-frame | 16732 | NA | 0 |
| BLCA | TCGA-DK-A3X1-01A | TCGA-DK-A3X1 | PSCA|AVL9 | PSCA | AVL9 | 8 | 7 | 1 | 1 | 2 | 1 | 1 | 3.1 | 143764142 | 32620439 | tier3 | NA | 13695 | NA | 0.34425 |
| BLCA | TCGA-G2-A3VY-01A | TCGA-G2-A3VY | EEF2|EIF2AK2 | EEF2 | EIF2AK2 | 19 | 2 | -1 | -1 | 2 | 27 | 17 | 3.9 | 3976055 | 37342384 | tier3 | NA | 5305 | NA | 0.38364 |
| CESC | TCGA-LP-A5U2-01A | TCGA-LP-A5U2 | EEF2|EIF2AK2 | EEF2 | EIF2AK2 | 19 | 2 | -1 | -1 | 2 | 14 | 9 | 3.9 | 3976055 | 37342384 | tier3 | NA | 5306 | NA | 0.38364 |
| STAD | TCGA-BR-8679-01A | TCGA-BR-8679 | EEF2|EIF2AK2 | EEF2 | EIF2AK2 | 19 | 2 | -1 | -1 | 2 | 13 | 3 | 3.9 | 3976055 | 37342384 | tier3 | NA | 5304 | NA | 0.38364 |
| THCA | TCGA-ET-A3DR-01A | TCGA-ET-A3DR | EEF2|ERBB3 | EEF2 | ERBB3 | 19 | 12 | -1 | 1 | 2 | 24 | 24 | 0.055 | 3976055 | 56492035 | tier4 | 3UTR-5UTR | 5307 | NA | 0.38579 |
| ACC | TCGA-OR-A5JG-01A | TCGA-OR-A5JG | EEF2|TYK2 | EEF2 | TYK2 | 19 | 19 | -1 | -1 | 2 | 14 | 12 | 0.49 | 3976055 | 10491352 | tier3 | 3UTR-5UTR | 5321 | NA | 0.37662 |
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