Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | WNK2|SUSD3 | WNK2 | SUSD3 | 9 | 9 | 1 | 1 | 2 | 38 | 32 | 1.1 | 96031028 | 95838066 | tier2 | In-frame | 19897 | NA | 0 |
| LIHC | TCGA-BC-A10R-01A | TCGA-BC-A10R | WNK2|C9orf89 | WNK2 | C9orf89 | 9 | 9 | 1 | 1 | 7 | 2 | 2 | 0.006 | 96052329 | 95869956 | tier1 | In-frame | 19894 | NA | 0 |
| LUSC | TCGA-22-5483-01A | TCGA-22-5483 | WNK2|SECISBP2 | WNK2 | SECISBP2 | 9 | 9 | 1 | 1 | 2 | 4 | 3 | 0.079 | 96026315 | 91972326 | tier2 | Out-of-frame | 19896 | NA | 0 |
| UCS | TCGA-NF-A4WU-01A | TCGA-NF-A4WU | WNK2|CENPP | WNK2 | CENPP | 9 | 9 | 1 | 1 | 10 | 4 | 4 | 0.057 | 96070866 | 95373596 | tier1 | In-frame | 19895 | NA | 0 |
| SARC | TCGA-DX-AB2F-01A | TCGA-DX-AB2F | ATP7A|PTPRR | ATP7A | PTPRR | X | 12 | 1 | -1 | 6 | 8 | 8 | 1.1 | 77166332 | 71033057 | tier1 | 5UTR-CDS | 1764 | NA | 0.37654 |
| SARC | TCGA-DX-A48U-01A | TCGA-DX-A48U | NLGN4Y|SHISA6 | NLGN4Y | SHISA6 | Y | 17 | 1 | 1 | 6 | 4 | 3 | 0.56 | 16835149 | 11459057 | tier1 | In-frame | 11597 | validated | 0.334 |
| SKCM | TCGA-ER-A19T-01A | TCGA-ER-A19T | NLGN4Y|CYorf15A | NLGN4Y | CYorf15A | Y | Y | 1 | 1 | 5 | 1 | 1 | 0.47 | 16636816 | 21749096 | tier3 | 5UTR-5UTR | 11596 | non-validated | 0 |
| LUSC | TCGA-85-7697-01A | TCGA-85-7697 | AQP3|B2M | AQP3 | B2M | 9 | 15 | -1 | 1 | 2 | 1 | 1 | 0.067 | 33441152 | 45003720 | tier3 | 3UTR-5UTR | 1170 | NA | 0.36223 |
| ACC | TCGA-OR-A5JA-01A | TCGA-OR-A5JA | VCP|KIAA1539 | VCP | KIAA1539 | 9 | 9 | -1 | -1 | 3 | 8 | 7 | 0.9 | 35072334 | 35108734 | tier1 | CDS-5UTR | 19539 | NA | 0 |
| LGG | TCGA-E1-5304-01A | TCGA-E1-5304 | VCP|C9orf131 | VCP | C9orf131 | 9 | 9 | -1 | 1 | 2 | 6 | 4 | 0.53 | 35072334 | 35042858 | tier2 | Out-of-frame | 19538 | NA | 0 |
| CESC | TCGA-ZJ-AAX4-01A | TCGA-ZJ-AAX4 | BRWD3|LRCH2 | BRWD3 | LRCH2 | X | X | -1 | -1 | 5 | 3 | 3 | 0.16 | 80064038 | 114391230 | tier1 | Out-of-frame | 2241 | NA | 0.35706 |
| HNSC | TCGA-QK-A8ZB-01A | TCGA-QK-A8ZB | BRWD3|FAM155A | BRWD3 | FAM155A | X | 13 | -1 | -1 | 27 | 19 | 18 | 0.24 | 80047353 | 107823134 | tier1 | In-frame | 2240 | NA | 0.34732 |
| BLCA | TCGA-4Z-AA7M-01A | TCGA-4Z-AA7M | MELK|CNTFR | MELK | CNTFR | 9 | 9 | 1 | -1 | 4 | 2 | 2 | 0.6 | 36573004 | 34581203 | tier1 | 5UTR-5UTR | 10249 | NA | 0.38267 |
| CESC | TCGA-MU-A5YI-01A | TCGA-MU-A5YI | MELK|MS4A12 | MELK | MS4A12 | 9 | 11 | 1 | 1 | 33 | 37 | 34 | 0.097 | 36607670 | 60264786 | tier1 | CDS-5UTR | 10250 | NA | 0.3751 |
| LUAD | TCGA-97-A4M3-01A | TCGA-97-A4M3 | FAT3|DPP3 | FAT3 | DPP3 | 11 | 11 | 1 | 1 | 37 | 14 | 12 | 0.17 | 92088570 | 66276550 | tier1 | In-frame | 6275 | NA | 0.35464 |
| LUAD | TCGA-97-A4M3-01A | TCGA-97-A4M3 | FAT3|CDH26 | FAT3 | CDH26 | 11 | 20 | 1 | 1 | 21 | 11 | 11 | 0.051 | 92620279 | 58577868 | tier1 | Out-of-frame | 6274 | NA | 0.34568 |
| BRCA | TCGA-AR-A24L-01A | TCGA-AR-A24L | SLC16A9|ADK | SLC16A9 | ADK | 10 | 10 | -1 | 1 | 103 | 120 | 105 | 0.31 | 61469237 | 76468079 | tier1 | 5UTR-CDS | 16041 | NA | 0 |
| HNSC | TCGA-CR-7367-01A | TCGA-CR-7367 | SLC16A9|ANK3 | SLC16A9 | ANK3 | 10 | 10 | -1 | -1 | 2 | 3 | 2 | 0.63 | 61469237 | 61815794 | tier3 | 5UTR-CDS | 16042 | NA | 0 |
| BLCA | TCGA-4Z-AA87-01A | TCGA-4Z-AA87 | TAF3|APP | TAF3 | APP | 10 | 21 | 1 | -1 | 7 | 4 | 4 | 0.18 | 8019286 | 27394358 | tier1 | In-frame | 17326 | NA | 0 |
| LUAD | TCGA-53-7624-01A | TCGA-53-7624 | TAF3|ATP5C1 | TAF3 | ATP5C1 | 10 | 10 | 1 | 1 | 40 | 29 | 26 | 0.2 | 7866523 | 7839010 | tier1 | In-frame | 17327 | NA | 0 |
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