TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
MESO	TCGA-UT-A88E-01B	TCGA-UT-A88E	CACNA2D3\|SCAF11	CACNA2D3	SCAF11	3	12	1	-1	5	4	4	2.4	54604131	46357971	tier1	CDS-5UTR	2872	NA	0.33005
THCA	TCGA-E8-A432-01A	TCGA-E8-A432	CACNA2D3\|IFT74	CACNA2D3	IFT74	3	9	1	1	3	5	1	0.081	55021780	27009018	tier4	In-frame	2871	NA	0.33698
STAD	TCGA-CD-8535-01A	TCGA-CD-8535	CCNB2\|RNF111	CCNB2	RNF111	15	15	1	1	5	37	30	0.093	59409567	59386982	tier1	Out-of-frame	3206	NA	0.36983
STAD	TCGA-VQ-A92D-01A	TCGA-VQ-A92D	CCNB2\|TCF12	CCNB2	TCF12	15	15	1	1	2	59	55	1.2	59409567	57578355	tier2	CDS-3UTR	3207	NA	0.37595
BRCA	TCGA-E2-A15A-01A	TCGA-E2-A15A	DYRK1A\|KDM4B	DYRK1A	KDM4B	21	19	1	1	2	20	17	4.5	38739930	5039847	tier3	5UTR-CDS	5231	NA	0.37693
KIRP	TCGA-B9-A5W9-01A	TCGA-B9-A5W9	DYRK1A\|HUNK	DYRK1A	HUNK	21	21	1	1	6	20	18	0.48	38792686	33296780	tier2	Out-of-frame	5228	NA	0.38468
PRAD	TCGA-XK-AAJA-01A	TCGA-XK-AAJA	DYRK1A\|KCNJ6	DYRK1A	KCNJ6	21	21	1	-1	4	5	5	0.58	38792686	39087434	tier1	In-frame	5230	NA	0.38066
HNSC	TCGA-D6-A4Z9-01A	TCGA-D6-A4Z9	DYRK1A\|IFNGR2	DYRK1A	IFNGR2	21	21	1	1	9	13	12	1.8	38739930	34793787	tier1	5UTR-CDS	5229	NA	0.38148
BRCA	TCGA-A2-A0CW-01A	TCGA-A2-A0CW	DYRK1A\|BRWD1	DYRK1A	BRWD1	21	21	1	-1	4	6	6	0.24	38792686	40574471	tier1	Out-of-frame	5227	NA	0.38298
BRCA	TCGA-BH-A1FD-01A	TCGA-BH-A1FD	DYRK1A\|MRPS6	DYRK1A	MRPS6	21	21	1	1	43	24	23	2.7	38858916	35497641	tier1	Out-of-frame	5232	NA	0.38018
BRCA	TCGA-C8-A130-01A	TCGA-C8-A130	DYRK1A\|ZBTB46	DYRK1A	ZBTB46	21	20	1	-1	42	34	28	1.2	38845182	62422143	tier1	CDS-5UTR	5235	validated	0.38338
HNSC	TCGA-CQ-7065-01A	TCGA-CQ-7065	DYRK1A\|RUNX1	DYRK1A	RUNX1	21	21	1	-1	4	2	2	1.7	38868560	36265260	tier1	Out-of-frame	5233	NA	0.38272
LUAD	TCGA-67-3771-01A	TCGA-67-3771	DYRK1A\|TTC3	DYRK1A	TTC3	21	21	1	1	5	5	5	0.005	38792686	38560796	tier1	Out-of-frame	5234	validated	0.38028
PRAD	TCGA-XQ-A8TB-01A	TCGA-XQ-A8TB	ERG\|ABCC4	ERG	ABCC4	21	13	-1	-1	10	5	5	1	39947586	95900007	tier1	Out-of-frame	5765	NA	0.37562
PRAD	TCGA-KK-A6E1-01A	TCGA-KK-A6E1	ERG\|KCNJ6	ERG	KCNJ6	21	21	-1	-1	2	29	26	0.13	39947586	38997786	tier3	Out-of-frame	5766	NA	0.37364
PRAD	TCGA-J4-A67S-01A	TCGA-J4-A67S	ERG\|TMPRSS2	ERG	TMPRSS2	21	21	-1	-1	2	5	5	2	39947586	42870116	tier2	CDS-5UTR	5770	NA	0.3753
PRAD	TCGA-V1-A8WS-01A	TCGA-V1-A8WS	ERG\|TMPRSS2	ERG	TMPRSS2	21	21	-1	-1	4	7	7	2	39947586	42852529	tier1	Out-of-frame	5771	NA	0.3753
PRAD	TCGA-CH-5739-01A	TCGA-CH-5739	ERG\|PLEKHH1	ERG	PLEKHH1	21	14	-1	1	5	3	2	0.096	39947586	68022542	tier1	In-frame	5767	NA	0.3732
PRAD	TCGA-HC-7230-01A	TCGA-HC-7230	ERG\|SON	ERG	SON	21	21	-1	1	10	3	3	0.45	39947586	34918519	tier1	Out-of-frame	5768	NA	0.37484
PRAD	TCGA-EJ-7797-01A	TCGA-EJ-7797	ERG\|TAF8	ERG	TAF8	21	6	-1	1	4	3	3	1.2	39947586	42019095	tier1	In-frame	5769	NA	0.37247

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