Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| KICH | TCGA-KL-8325-01A | TCGA-KL-8325 | RHCG|C7 | RHCG | C7 | 15 | 5 | -1 | 1 | 2 | 67 | 56 | 0.29 | 90014642 | 40954982 | tier3 | NA | 14647 | non-validated | 0 |
| THCA | TCGA-E8-A438-01A | TCGA-E8-A438 | NTRK3|ETV6 | NTRK3 | ETV6 | 15 | 12 | -1 | 1 | 8 | 5 | 5 | 5.5 | 88669502 | 12022358 | tier1 | In-frame | 11841 | NA | 0.39062 |
| THCA | TCGA-ET-A39L-01A | TCGA-ET-A39L | NTRK3|RBPMS | NTRK3 | RBPMS | 15 | 8 | -1 | 1 | 133 | 75 | 70 | 0.004 | 88669502 | 30402011 | tier1 | In-frame | 11842 | NA | 0.39128 |
| SKCM | TCGA-DA-A1HW-06A | TCGA-DA-A1HW | SEC11A|VPS33B | SEC11A | VPS33B | 15 | 15 | -1 | -1 | 419 | 320 | 237 | 100 | 85259256 | 91546361 | tier1 | Out-of-frame | 15490 | validated | 0 |
| UCEC | TCGA-EY-A4KR-01A | TCGA-EY-A4KR | GLYR1|C16orf89 | GLYR1 | C16orf89 | 16 | 16 | -1 | -1 | 73 | 39 | 36 | 0.075 | 4861171 | 5097965 | tier1 | Out-of-frame | 7135 | NA | 0 |
| BLCA | TCGA-CU-A3KJ-01A | TCGA-CU-A3KJ | ITGAX|PHKG2 | ITGAX | PHKG2 | 16 | 16 | 1 | 1 | 2 | 3 | 3 | 0.032 | 31388586 | 30764715 | tier3 | In-frame | 8394 | NA | 0.37099 |
| BLCA | TCGA-R3-A69X-01A | TCGA-R3-A69X | UQCRC2|CYB5RL | UQCRC2 | CYB5RL | 16 | 1 | 1 | -1 | 14 | 16 | 14 | 1.1 | 21968887 | 54645025 | tier1 | In-frame | 19290 | NA | 0 |
| UCEC | TCGA-AX-A3FX-01A | TCGA-AX-A3FX | MBTPS1|CDH5 | MBTPS1 | CDH5 | 16 | 16 | -1 | 1 | 5 | 3 | 3 | 0.18 | 84096910 | 66422227 | tier1 | In-frame | 10070 | NA | 0.37758 |
| ESCA | TCGA-JY-A6FA-01A | TCGA-JY-A6FA | MBTPS1|TAF1C | MBTPS1 | TAF1C | 16 | 16 | -1 | -1 | 21 | 164 | 153 | 0.58 | 84120963 | 84213950 | tier1 | In-frame | 10071 | NA | 0.35884 |
| CESC | TCGA-VS-A953-01A | TCGA-VS-A953 | CDH13|TXNDC11 | CDH13 | TXNDC11 | 16 | 16 | 1 | -1 | 31 | 25 | 23 | 0.88 | 82660742 | 11792181 | tier1 | In-frame | 3382 | NA | 0.35671 |
| BRCA | TCGA-AR-A0TP-01A | TCGA-AR-A0TP | PDPK1|CCNF | PDPK1 | CCNF | 16 | 16 | 1 | 1 | 8 | 1 | 1 | 0.33 | 2588137 | 2495459 | tier2 | Out-of-frame | 12562 | NA | 0.38668 |
| CESC | TCGA-FU-A3TQ-01A | TCGA-FU-A3TQ | PDPK1|FAM100A | PDPK1 | FAM100A | 16 | 16 | 1 | -1 | 4 | 14 | 13 | 1.3 | 2588137 | 4660556 | tier1 | In-frame | 12563 | NA | 0.38669 |
| LAML | TCGA-AB-2920-03B | TCGA-AB-2920 | KSR1|ODZ1 | KSR1 | ODZ1 | 17 | X | 1 | -1 | 7 | 4 | 4 | 0.24 | 25877734 | 123695667 | tier1 | 5UTR-CDS | 9164 | NA | 0.36775 |
| BRCA | TCGA-E2-A14V-01A | TCGA-E2-A14V | KSR1|MSI2 | KSR1 | MSI2 | 17 | 17 | 1 | 1 | 3 | 11 | 10 | 1.7 | 25783900 | 55478740 | tier1 | In-frame | 9163 | NA | 0.36199 |
| BRCA | TCGA-OL-A5RZ-01A | TCGA-OL-A5RZ | KSR1|PIPOX | KSR1 | PIPOX | 17 | 17 | 1 | 1 | 7 | 1 | 1 | 0.16 | 25783900 | 27371877 | tier2 | In-frame | 9165 | NA | 0.3574 |
| LUAD | TCGA-MP-A5C7-01A | TCGA-MP-A5C7 | KSR1|EFCAB5 | KSR1 | EFCAB5 | 17 | 17 | 1 | 1 | 10 | 9 | 5 | 0.33 | 25887482 | 28295809 | tier1 | Out-of-frame | 9162 | NA | 0.35725 |
| SKCM | TCGA-GN-A264-06A | TCGA-GN-A264 | GFOD2|TRIO | GFOD2 | TRIO | 16 | 5 | -1 | 1 | 18 | 12 | 12 | 0.24 | 67753066 | 14270934 | tier1 | 5UTR-CDS | 7037 | non-validated | 0.38518 |
| SKCM | TCGA-EE-A2MI-06A | TCGA-EE-A2MI | SSH2|C10orf54 | SSH2 | C10orf54 | 17 | 10 | -1 | -1 | 19 | 19 | 19 | 0.011 | 28256956 | 73521783 | tier1 | Out-of-frame | 16912 | non-validated | 0 |
| STAD | TCGA-VQ-A925-01A | TCGA-VQ-A925 | SSH2|SLC6A4 | SSH2 | SLC6A4 | 17 | 17 | -1 | -1 | 9 | 30 | 16 | 2.1 | 28120912 | 28549933 | tier1 | CDS-5UTR | 16914 | NA | 0 |
| CESC | TCGA-EA-A556-01A | TCGA-EA-A556 | SSH2|BLMH | SSH2 | BLMH | 17 | 17 | -1 | -1 | 3 | 2 | 1 | 0.23 | 28256956 | 28601215 | tier3 | In-frame | 16911 | NA | 0 |
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