Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | SMARCC2|CS | SMARCC2 | CS | 12 | 12 | -1 | -1 | 13 | 10 | 9 | 1.6 | 56561844 | 56680429 | tier1 | In-frame | 16392 | NA | 0 |
| PRAD | TCGA-HC-8264-01B | TCGA-HC-8264 | MAP3K12|GDF11 | MAP3K12 | GDF11 | 12 | 12 | -1 | 1 | 5 | 8 | 7 | 0.038 | 53893211 | 56142370 | tier1 | 5UTR-CDS | 9854 | NA | 0.37626 |
| HNSC | TCGA-P3-A6SX-01A | TCGA-P3-A6SX | CSAD|NPFF | CSAD | NPFF | 12 | 12 | -1 | -1 | 7 | 4 | 3 | 100 | 53574351 | 53900926 | tier1 | 5UTR-CDS | 4258 | NA | 0.34259 |
| BRCA | TCGA-GM-A3XL-01A | TCGA-GM-A3XL | CSAD|ITGB7 | CSAD | ITGB7 | 12 | 12 | -1 | -1 | 37 | 14 | 13 | 0.077 | 53575010 | 53594978 | tier1 | 5UTR-5UTR | 4257 | non-validated | 0.36945 |
| SARC | TCGA-X2-A95T-01A | TCGA-X2-A95T | RB1|ESR2 | RB1 | ESR2 | 13 | 14 | 1 | -1 | 3 | 1 | 1 | 0.27 | 48955579 | 64749793 | tier2 | CDS-5UTR | 14402 | non-validated | 0 |
| HNSC | TCGA-D6-6827-01A | TCGA-D6-6827 | RB1|HTR2C | RB1 | HTR2C | 13 | X | 1 | 1 | 19 | 17 | 14 | 0.23 | 48881542 | 114141152 | tier1 | Out-of-frame | 14405 | NA | 0 |
| BLCA | TCGA-HQ-A5NE-01A | TCGA-HQ-A5NE | RB1|WDFY2 | RB1 | WDFY2 | 13 | 13 | 1 | 1 | 9 | 7 | 6 | 0.97 | 48881542 | 52325446 | tier1 | Out-of-frame | 14410 | NA | 0 |
| LUSC | TCGA-60-2695-01A | TCGA-60-2695 | RB1|CNIH3 | RB1 | CNIH3 | 13 | 1 | 1 | 1 | 33 | 25 | 23 | 0.44 | 48881542 | 224868660 | tier1 | In-frame | 14400 | non-validated | 0 |
| LUSC | TCGA-52-7809-01A | TCGA-52-7809 | RB1|GADD45GIP1 | RB1 | GADD45GIP1 | 13 | 19 | 1 | -1 | 18 | 12 | 11 | 1.5 | 48955579 | 13065340 | tier1 | Out-of-frame | 14404 | NA | 0 |
| OV | TCGA-24-1470-01A | TCGA-24-1470 | RB1|KCNRG | RB1 | KCNRG | 13 | 13 | 1 | 1 | 4 | 1 | 1 | 0.08 | 48939107 | 50594350 | tier2 | Out-of-frame | 14406 | NA | 0 |
| SARC | TCGA-DX-A3UF-01A | TCGA-DX-A3UF | RB1|CLEC2B | RB1 | CLEC2B | 13 | 12 | 1 | -1 | 30 | 19 | 18 | 1 | 48881542 | 10015172 | tier1 | CDS-5UTR | 14399 | NA | 0 |
| SARC | TCGA-LI-A9QH-01A | TCGA-LI-A9QH | RB1|DIAPH3 | RB1 | DIAPH3 | 13 | 13 | 1 | -1 | 16 | 11 | 9 | 0.24 | 48881542 | 60707123 | tier1 | In-frame | 14401 | NA | 0 |
| SARC | TCGA-IF-A4AK-01A | TCGA-IF-A4AK | RB1|FRYL | RB1 | FRYL | 13 | 4 | 1 | -1 | 6 | 2 | 2 | 0.048 | 49039504 | 48636507 | tier1 | CDS-5UTR | 14403 | NA | 0 |
| SARC | TCGA-SI-AA8B-01A | TCGA-SI-AA8B | RB1|KIAA0226L | RB1 | KIAA0226L | 13 | 13 | 1 | -1 | 10 | 3 | 3 | 2.4 | 48955579 | 46918966 | tier1 | Out-of-frame | 14407 | NA | 0 |
| SARC | TCGA-N1-A6IA-01A | TCGA-N1-A6IA | RB1|MED4 | RB1 | MED4 | 13 | 13 | 1 | -1 | 36 | 27 | 25 | 0.029 | 48916850 | 48664554 | tier1 | In-frame | 14409 | non-validated | 0 |
| SKCM | TCGA-FW-A5DX-01A | TCGA-FW-A5DX | RB1|MED4 | RB1 | MED4 | 13 | 13 | 1 | -1 | 23 | 12 | 12 | 0.029 | 48916850 | 48664554 | tier2 | In-frame | 14408 | NA | 0 |
| GBM | TCGA-06-5856-01A | TCGA-06-5856 | SETD1B|KDM2B | SETD1B | KDM2B | 12 | 12 | 1 | -1 | 25 | 94 | 81 | 0.44 | 122248741 | 122013764 | tier1 | Out-of-frame | 15686 | NA | 0 |
| SKCM | TCGA-GN-A265-06A | TCGA-GN-A265 | TMX1|TRIM9 | TMX1 | TRIM9 | 14 | 14 | 1 | -1 | 15 | 2 | 2 | 1.6 | 51710689 | 51467558 | tier1 | In-frame | 18321 | NA | 0 |
| LUAD | TCGA-91-7771-01A | TCGA-91-7771 | WARS|C8orf12 | WARS | C8orf12 | 14 | 8 | -1 | 1 | 12 | 14 | 9 | 1.6 | 100835424 | 11291429 | tier1 | CDS-5UTR | 19705 | NA | 0 |
| LUAD | TCGA-62-8402-01A | TCGA-62-8402 | WARS|PPP2R3C | WARS | PPP2R3C | 14 | 14 | -1 | -1 | 2 | 6 | 1 | 0.2 | 100800125 | 35585943 | tier3 | 3UTR-CDS | 19708 | NA | 0 |
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