Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-EJ-A46G-01A | TCGA-EJ-A46G | MAP2K5|IQCH | MAP2K5 | IQCH | 15 | 15 | 1 | 1 | 4 | 2 | 2 | 1.2 | 68020283 | 67757465 | tier1 | In-frame | 9844 | NA | 0.39116 |
| SARC | TCGA-DX-A1L3-01A | TCGA-DX-A1L3 | MAP2K5|C12orf28 | MAP2K5 | C12orf28 | 15 | 12 | 1 | 1 | 37 | 29 | 28 | 3.2 | 67893087 | 70272808 | tier1 | CDS-5UTR | 9841 | non-validated | 0 |
| HNSC | TCGA-CN-5370-01A | TCGA-CN-5370 | THBS1|NRG1 | THBS1 | NRG1 | 15 | 8 | 1 | 1 | 53 | 31 | 30 | 0.24 | 39876623 | 32585467 | tier1 | Out-of-frame | 17766 | NA | 0 |
| HNSC | TCGA-CV-6960-01A | TCGA-CV-6960 | THBS1|AGBL1 | THBS1 | AGBL1 | 15 | 15 | 1 | 1 | 3035 | 2290 | 2139 | 0.069 | 39881555 | 86790902 | tier1 | Out-of-frame | 17765 | NA | 0 |
| SARC | TCGA-DX-A8BM-01A | TCGA-DX-A8BM | ITGA11|ADAMTSL3 | ITGA11 | ADAMTSL3 | 15 | 15 | -1 | 1 | 4 | 4 | 3 | 1.3 | 68606117 | 84639236 | tier1 | Out-of-frame | 8372 | NA | 0.36318 |
| ACC | TCGA-OR-A5J9-01A | TCGA-OR-A5J9 | ITPKA|NUSAP1 | ITPKA | NUSAP1 | 15 | 15 | 1 | 1 | 12 | 6 | 4 | 100 | 41786614 | 41634584 | tier1 | In-frame | 8439 | NA | 0.3689 |
| LUSC | TCGA-85-8071-01A | TCGA-85-8071 | ITPKA|RTF1 | ITPKA | RTF1 | 15 | 15 | 1 | 1 | 2 | 1 | 1 | 0.33 | 41786614 | 41745099 | tier3 | In-frame | 8440 | NA | 0.37047 |
| MESO | TCGA-3H-AB3M-01A | TCGA-3H-AB3M | PLCB2|MAPKBP1 | PLCB2 | MAPKBP1 | 15 | 15 | -1 | 1 | 5 | 8 | 8 | 0.028 | 40581473 | 42092021 | tier1 | In-frame | 12961 | NA | 0.38168 |
| BLCA | TCGA-4Z-AA7R-01A | TCGA-4Z-AA7R | ADAM10|C15orf43 | ADAM10 | C15orf43 | 15 | 15 | -1 | 1 | 34 | 24 | 22 | 2.8 | 59009776 | 45266065 | tier1 | In-frame | 403 | NA | 0 |
| BRCA | TCGA-A7-A0DA-01A | TCGA-A7-A0DA | ADAM10|FIZ1 | ADAM10 | FIZ1 | 15 | 19 | -1 | -1 | 54 | 42 | 35 | 1.7 | 58957296 | 56109267 | tier1 | CDS-5UTR | 404 | NA | 0.37764 |
| BRCA | TCGA-C8-A8HP-01A | TCGA-C8-A8HP | ADAM10|PLAC9 | ADAM10 | PLAC9 | 15 | 10 | -1 | 1 | 83 | 66 | 62 | 0.48 | 59041679 | 81901838 | tier1 | In-frame | 405 | NA | 0.37161 |
| LGG | TCGA-HT-8011-01A | TCGA-HT-8011 | ADAM10|ZNF770 | ADAM10 | ZNF770 | 15 | 15 | -1 | -1 | 3 | 3 | 2 | 0.023 | 59041679 | 35279874 | tier1 | CDS-5UTR | 406 | NA | 0.37617 |
| LUSC | TCGA-22-4601-01A | TCGA-22-4601 | RABGGTB|FOXJ3 | RABGGTB | FOXJ3 | 1 | 1 | 1 | -1 | 4 | 9 | 9 | 0.99 | 76251959 | 42647695 | tier1 | Out-of-frame | 14151 | NA | 0 |
| PRAD | TCGA-TP-A8TV-01A | TCGA-TP-A8TV | PPM1B|MTA3 | PPM1B | MTA3 | 2 | 2 | 1 | 1 | 5 | 3 | 3 | 0.019 | 44396413 | 42980514 | tier1 | 5UTR-CDS | 13308 | NA | 0.38106 |
| LUAD | TCGA-NJ-A4YF-01A | TCGA-NJ-A4YF | PPM1B|ABCG8 | PPM1B | ABCG8 | 2 | 2 | 1 | 1 | 3 | 3 | 3 | 1.3 | 44445676 | 44071646 | tier1 | In-frame | 13306 | NA | 0.37124 |
| STAD | TCGA-BR-8687-01A | TCGA-BR-8687 | PPM1B|ABCG8 | PPM1B | ABCG8 | 2 | 2 | 1 | 1 | 4 | 20 | 20 | 1.3 | 44396413 | 44102285 | tier4 | 5UTR-CDS | 13305 | NA | 0.37124 |
| LUSC | TCGA-52-7809-01A | TCGA-52-7809 | PPM1B|SRBD1 | PPM1B | SRBD1 | 2 | 2 | 1 | -1 | 17 | 18 | 16 | 1.8 | 44396413 | 45647033 | tier1 | 5UTR-CDS | 13309 | NA | 0.36962 |
| STAD | TCGA-BR-8687-01A | TCGA-BR-8687 | PPM1B|IQCA1 | PPM1B | IQCA1 | 2 | 2 | 1 | -1 | 9 | 29 | 29 | 0.037 | 44396413 | 237406130 | tier1 | 5UTR-CDS | 13307 | NA | 0.37272 |
| LIHC | TCGA-DD-AAE2-01A | TCGA-DD-AAE2 | CYP2C9|APOH | CYP2C9 | APOH | 10 | 17 | 1 | -1 | 2 | 1 | 1 | 0.95 | 96749447 | 64225556 | tier3 | 3UTR-5UTR | 4501 | NA | 0.36069 |
| LIHC | TCGA-PD-A5DF-01A | TCGA-PD-A5DF | KIF11|STAT4 | KIF11 | STAT4 | 10 | 2 | 1 | -1 | 3 | 1 | 1 | 0.49 | 94373376 | 191941051 | tier2 | In-frame | 8928 | validated | 0.37726 |
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