Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-CV-7430-01A | TCGA-CV-7430 | IRAK2|SRGAP3 | IRAK2 | SRGAP3 | 3 | 3 | 1 | -1 | 32 | 11 | 11 | 0.088 | 10206732 | 9166601 | tier1 | In-frame | 8337 | NA | 0.38173 |
| LUSC | TCGA-37-A5EN-01A | TCGA-37-A5EN | PTGFRN|CD2 | PTGFRN | CD2 | 1 | 1 | 1 | 1 | 46 | 18 | 16 | 0.1 | 117504290 | 117297253 | tier1 | In-frame | 13769 | NA | 0.36806 |
| BRCA | TCGA-C8-A12L-01A | TCGA-C8-A12L | PTGFRN|NOTCH2 | PTGFRN | NOTCH2 | 1 | 1 | 1 | -1 | 3 | 8 | 8 | 0.21 | 117492194 | 120512367 | tier1 | In-frame | 13770 | non-validated | 0.38568 |
| BRCA | TCGA-BH-A0GY-01A | TCGA-BH-A0GY | PTGFRN|AGBL4 | PTGFRN | AGBL4 | 1 | 1 | 1 | -1 | 13 | 4 | 4 | 3 | 117492194 | 50163109 | tier1 | In-frame | 13768 | NA | 0.35705 |
| OV | TCGA-36-1574-01A | TCGA-36-1574 | NOTCH2|PSMA5 | NOTCH2 | PSMA5 | 1 | 1 | -1 | -1 | 31 | 12 | 7 | 0.4 | 120611948 | 109964548 | tier1 | Out-of-frame | 11666 | non-validated | 0.38771 |
| HNSC | TCGA-CQ-7065-01A | TCGA-CQ-7065 | NOTCH2|SPAG17 | NOTCH2 | SPAG17 | 1 | 1 | -1 | -1 | 8 | 30 | 28 | 0.005 | 120611948 | 118524024 | tier1 | In-frame | 11667 | NA | 0.38445 |
| LUSC | TCGA-33-A4WN-01A | TCGA-33-A4WN | NOTCH2|CWH43 | NOTCH2 | CWH43 | 1 | 4 | -1 | 1 | 5 | 4 | 4 | 0.082 | 120506197 | 49032842 | tier1 | In-frame | 11664 | NA | 0.38353 |
| OV | TCGA-24-1474-01A | TCGA-24-1474 | NOTCH2|MNDA | NOTCH2 | MNDA | 1 | 1 | -1 | 1 | 132 | 38 | 21 | 0.2 | 120478095 | 158815377 | tier1 | Out-of-frame | 11665 | NA | 0.38439 |
| STAD | TCGA-BR-8289-01A | TCGA-BR-8289 | FKBP11|PRKAG1 | FKBP11 | PRKAG1 | 12 | 12 | -1 | -1 | 3 | 49 | 44 | 100 | 49317565 | 49399635 | tier1 | In-frame | 6547 | NA | 0.36055 |
| SARC | TCGA-DX-A7EI-01A | TCGA-DX-A7EI | SLC38A2|RAB3IP | SLC38A2 | RAB3IP | 12 | 12 | -1 | 1 | 38 | 60 | 54 | 5.9 | 46766292 | 70178500 | tier1 | 5UTR-CDS | 16186 | NA | 0 |
| KIRP | TCGA-G7-6792-01A | TCGA-G7-6792 | ROCK2|NCOA1 | ROCK2 | NCOA1 | 2 | 2 | -1 | 1 | 8 | 10 | 9 | 0.63 | 11484122 | 24866835 | tier1 | CDS-5UTR | 14895 | NA | 0 |
| PRAD | TCGA-EJ-A46G-01A | TCGA-EJ-A46G | ROCK2|NTSR2 | ROCK2 | NTSR2 | 2 | 2 | -1 | -1 | 23 | 12 | 12 | 0.46 | 11484122 | 11798848 | tier1 | Out-of-frame | 14896 | NA | 0 |
| LUAD | TCGA-67-3770-01A | TCGA-67-3770 | ROCK2|DTNB | ROCK2 | DTNB | 2 | 2 | -1 | -1 | 5 | 1 | 1 | 0.73 | 11484122 | 25656864 | tier3 | In-frame | 14894 | NA | 0 |
| STAD | TCGA-HU-A4GU-01A | TCGA-HU-A4GU | ROCK2|ASAP2 | ROCK2 | ASAP2 | 2 | 2 | -1 | 1 | 2 | 28 | 27 | 0.48 | 11338617 | 9419446 | tier2 | In-frame | 14893 | NA | 0 |
| PRAD | TCGA-YL-A9WL-01A | TCGA-YL-A9WL | IL6ST|LAMC2 | IL6ST | LAMC2 | 5 | 1 | -1 | 1 | 2 | 7 | 7 | 0.47 | 55247292 | 183177016 | tier3 | In-frame | 8204 | NA | 0.38161 |
| LUAD | TCGA-05-4427-01A | TCGA-05-4427 | IL6ST|ANKRD55 | IL6ST | ANKRD55 | 5 | 5 | -1 | -1 | 24 | 10 | 9 | 0.23 | 55272043 | 55412609 | tier1 | Out-of-frame | 8202 | NA | 0.38335 |
| PRAD | TCGA-ZG-A9L2-01A | TCGA-ZG-A9L2 | IL6ST|DDX4 | IL6ST | DDX4 | 5 | 5 | -1 | 1 | 16 | 17 | 15 | 0.27 | 55272043 | 55034778 | tier1 | CDS-5UTR | 8203 | NA | 0.3813 |
| LGG | TCGA-DU-8163-01A | TCGA-DU-8163 | CRB1|IGFN1 | CRB1 | IGFN1 | 1 | 1 | 1 | 1 | 22 | 7 | 4 | 1.1 | 197237612 | 201162375 | tier1 | CDS-5UTR | 4186 | NA | 0.36535 |
| CESC | TCGA-IR-A3LH-01A | TCGA-IR-A3LH | ACP2|CD74 | ACP2 | CD74 | 11 | 5 | -1 | -1 | 2 | 2 | 1 | 0.47 | 47261044 | 149792295 | tier4 | NA | 300 | NA | 0.362 |
| UCEC | TCGA-AP-A5FX-01A | TCGA-AP-A5FX | ACP2|MRPL48 | ACP2 | MRPL48 | 11 | 11 | -1 | 1 | 20 | 16 | 14 | 0.52 | 47266856 | 73555852 | tier1 | In-frame | 301 | NA | 0.33371 |
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