TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
BRCA	TCGA-B6-A0IN-01A	TCGA-B6-A0IN	RARA\|SKAP1	RARA	SKAP1	17	17	1	-1	232	136	116	0.19	38487648	46214699	tier1	Out-of-frame	14334	NA	0
BRCA	TCGA-BH-A202-01A	TCGA-BH-A202	RARA\|WIPF2	RARA	WIPF2	17	17	1	1	178	60	44	0.074	38487648	38430042	tier1	In-frame	14338	NA	0
BRCA	TCGA-AR-A0TX-01A	TCGA-AR-A0TX	RARA\|ZNF595	RARA	ZNF595	17	4	1	1	231	138	124	0.13	38487648	59323	tier1	Out-of-frame	14339	non-validated	0
LAML	TCGA-AB-2823-03A	TCGA-AB-2823	RARA\|PML	RARA	PML	17	15	1	1	34	16	15	0.15	38487648	74317198	tier1	In-frame	14320	NA	0
LAML	TCGA-AB-2840-03A	TCGA-AB-2840	RARA\|PML	RARA	PML	17	15	1	1	11	32	31	0.15	38487648	74317198	tier1	In-frame	14321	NA	0
LAML	TCGA-AB-2841-03B	TCGA-AB-2841	RARA\|PML	RARA	PML	17	15	1	1	21	33	30	0.15	38487648	74326819	tier1	In-frame	14322	NA	0
LAML	TCGA-AB-2872-03A	TCGA-AB-2872	RARA\|PML	RARA	PML	17	15	1	1	5	2	2	0.15	38487648	74326819	tier1	In-frame	14323	NA	0
LAML	TCGA-AB-2980-03A	TCGA-AB-2980	RARA\|PML	RARA	PML	17	15	1	1	8	10	8	0.15	38487648	74317198	tier1	In-frame	14324	validated	0
LAML	TCGA-AB-2991-03A	TCGA-AB-2991	RARA\|PML	RARA	PML	17	15	1	1	20	7	1	0.15	38487648	74317198	tier4	In-frame	14325	validated	0
LAML	TCGA-AB-2994-03A	TCGA-AB-2994	RARA\|PML	RARA	PML	17	15	1	1	87	53	50	0.15	38487648	74326819	tier1	In-frame	14326	non-validated	0
LAML	TCGA-AB-2998-03A	TCGA-AB-2998	RARA\|PML	RARA	PML	17	15	1	1	20	11	9	0.15	38487648	74325497	tier1	Out-of-frame	14327	non-validated	0
LAML	TCGA-AB-3001-03A	TCGA-AB-3001	RARA\|PML	RARA	PML	17	15	1	1	10	8	8	0.15	38487648	74317198	tier1	In-frame	14328	NA	0
LAML	TCGA-AB-3007-03A	TCGA-AB-3007	RARA\|PML	RARA	PML	17	15	1	1	13	10	9	0.15	38487648	74317198	tier1	In-frame	14329	validated	0
LAML	TCGA-AB-3012-03A	TCGA-AB-3012	RARA\|PML	RARA	PML	17	15	1	1	19	9	7	0.15	38499119	74326819	tier1	In-frame	14330	validated	0
LUAD	TCGA-95-7948-01A	TCGA-95-7948	RARA\|CDC6	RARA	CDC6	17	17	1	1	27	33	30	4.5	38465538	38457080	tier1	5UTR-CDS	14307	NA	0
LUAD	TCGA-55-1592-01A	TCGA-55-1592	RARA\|STAC2	RARA	STAC2	17	17	1	-1	62	34	29	0.11	38474700	37374426	tier1	5UTR-CDS	14336	NA	0
STAD	TCGA-RD-A7BT-01A	TCGA-RD-A7BT	RARA\|C17orf108	RARA	C17orf108	17	17	1	-1	92	715	632	0.19	38487648	26209738	tier1	Out-of-frame	14305	NA	0
UCEC	TCGA-2E-A9G8-01A	TCGA-2E-A9G8	RARA\|CERS4	RARA	CERS4	17	19	1	1	74	50	45	0.22	38474700	8315960	tier1	5UTR-5UTR	14310	NA	0
UCS	TCGA-N8-A4PQ-01A	TCGA-N8-A4PQ	RARA\|SLC9A3R1	RARA	SLC9A3R1	17	17	1	1	113	70	58	2.9	38508759	72758151	tier1	In-frame	14335	NA	0
KIRC	TCGA-CZ-5452-01A	TCGA-CZ-5452	PRKAB2\|FBP2	PRKAB2	FBP2	1	9	-1	-1	8	10	10	0.87	146643568	97349751	tier1	Out-of-frame	13521	NA	0.35777

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