TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
BRCA	TCGA-A7-A4SE-01A	TCGA-A7-A4SE	PKMYT1\|CLDN6	PKMYT1	CLDN6	16	16	-1	-1	53	30	25	1.7	3029649	3068485	tier1	CDS-5UTR	12919	NA	0.37912
KIRP	TCGA-BQ-5890-01A	TCGA-BQ-5890	PKMYT1\|CLDN6	PKMYT1	CLDN6	16	16	-1	-1	21	15	15	1.7	3026665	3066043	tier1	CDS-5UTR	12920	NA	0.37912
BRCA	TCGA-AR-A256-01A	TCGA-AR-A256	SMARCA4\|ICAM1	SMARCA4	ICAM1	19	19	1	1	16	17	16	0.19	11071850	10385441	tier1	5UTR-CDS	16376	non-validated	0
LUSC	TCGA-NC-A5HM-01A	TCGA-NC-A5HM	SMARCA4\|KDM4B	SMARCA4	KDM4B	19	19	1	1	4	2	2	1.2	11100119	5071021	tier2	Out-of-frame	16377	NA	0
ESCA	TCGA-JY-A6FH-01A	TCGA-JY-A6FH	SMARCA4\|SLC44A2	SMARCA4	SLC44A2	19	19	1	1	4	26	24	0.017	11107220	10745432	tier1	Out-of-frame	16379	NA	0
PRAD	TCGA-KK-A5A1-01A	TCGA-KK-A5A1	SMARCA4\|SLC44A2	SMARCA4	SLC44A2	19	19	1	1	2	2	2	0.017	11114073	10736929	tier3	Out-of-frame	16380	NA	0
BRCA	TCGA-AQ-A04J-01A	TCGA-AQ-A04J	SMARCA4\|CARM1	SMARCA4	CARM1	19	19	1	1	5	3	2	2.1	11097679	11024553	tier1	Out-of-frame	16369	non-validated	0
STAD	TCGA-VQ-A91K-01A	TCGA-VQ-A91K	SMARCA4\|CARM1	SMARCA4	CARM1	19	19	1	1	16	215	202	2.1	11100119	11022860	tier1	In-frame	16370	NA	0
BRCA	TCGA-A7-A4SD-01A	TCGA-A7-A4SD	SMARCA4\|DNM2	SMARCA4	DNM2	19	19	1	1	35	21	19	0.096	11071850	10883155	tier1	5UTR-CDS	16372	NA	0
BRCA	TCGA-AN-A0FJ-01A	TCGA-AN-A0FJ	SMARCA4\|DNM2	SMARCA4	DNM2	19	19	1	1	161	100	93	0.096	11136184	10930656	tier1	In-frame	16373	NA	0
ESCA	TCGA-2H-A9GN-01A	TCGA-2H-A9GN	SMARCA4\|DNM2	SMARCA4	DNM2	19	19	1	1	14	89	77	0.096	11071850	10916592	tier1	5UTR-CDS	16371	NA	0
LUAD	TCGA-55-8505-01A	TCGA-55-8505	SMARCA4\|DOCK6	SMARCA4	DOCK6	19	19	1	-1	65	41	31	0.38	11130377	11311728	tier1	In-frame	16375	NA	0
LUSC	TCGA-66-2771-01A	TCGA-66-2771	SMARCA4\|C19orf38	SMARCA4	C19orf38	19	19	1	1	4	3	3	0.064	11101999	10979894	tier1	In-frame	16367	NA	0
STAD	TCGA-BR-4357-01A	TCGA-BR-4357	SMARCA4\|C19orf38	SMARCA4	C19orf38	19	19	1	1	13	11	9	0.064	11098600	10979894	tier1	Out-of-frame	16368	NA	0
UCS	TCGA-N5-A4RT-01A	TCGA-N5-A4RT	SMARCA4\|DNM2	SMARCA4	DNM2	19	19	1	1	6	9	4	0.096	11170863	10939712	tier1	In-frame	16374	NA	0
UCS	TCGA-N6-A4VG-01A	TCGA-N6-A4VG	SMARCA4\|RNF216	SMARCA4	RNF216	19	7	1	-1	27	22	1	0.096	11152236	5800769	tier2	CDS-5UTR	16378	NA	0
LIHC	TCGA-KR-A7K8-01A	TCGA-KR-A7K8	KDM4B\|DKKL1	KDM4B	DKKL1	19	19	1	1	90	84	74	0.71	5047680	49877974	tier1	Out-of-frame	8671	NA	0.32424
SKCM	TCGA-EB-A44O-01A	TCGA-EB-A44O	KDM4B\|SLC25A42	KDM4B	SLC25A42	19	19	1	1	6	3	1	0.62	5138081	19206900	tier2	CDS-5UTR	8676	NA	0.33865
BRCA	TCGA-BH-A0B9-01A	TCGA-BH-A0B9	KDM4B\|UHRF1	KDM4B	UHRF1	19	19	1	1	5	10	10	0.23	4969241	4941540	tier1	5UTR-CDS	8677	non-validated	0.36661
BRCA	TCGA-BH-A0H7-01A	TCGA-BH-A0H7	KDM4B\|UHRF1	KDM4B	UHRF1	19	19	1	1	14	6	5	0.23	5144913	4929234	tier1	In-frame	8678	NA	0.36661

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