Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 153 | 542 | 467 | 0.08 | 125051854 | 125302253 | tier1 | NA | 11260 | validated | 0.37966 |
| ESCA | TCGA-VR-A8EY-01A | TCGA-VR-A8EY | NPAS2|PACSIN2 | NPAS2 | PACSIN2 | 2 | 22 | 1 | -1 | 13 | 60 | 52 | 1.6 | 101521248 | 43284804 | tier1 | Out-of-frame | 11680 | NA | 0.37084 |
| ESCA | TCGA-L5-A8NT-01A | TCGA-L5-A8NT | NRP2|KLF7 | NRP2 | KLF7 | 2 | 2 | 1 | -1 | 77 | 306 | 273 | 0.57 | 206631527 | 207953305 | tier1 | In-frame | 11759 | NA | 0.37638 |
| ESCA | TCGA-R6-A8W5-01B | TCGA-R6-A8W5 | OSBP|GIF | OSBP | GIF | 11 | 11 | -1 | -1 | 4 | 176 | 153 | 0.007 | 59361077 | 59597018 | tier1 | In-frame | 12062 | NA | 0.35429 |
| ESCA | TCGA-VR-A8EU-01A | TCGA-VR-A8EU | OSBPL3|ANO1 | OSBPL3 | ANO1 | 7 | 11 | -1 | 1 | 50 | 248 | 224 | 0.33 | 25019505 | 69978025 | tier1 | 5UTR-CDS | 12078 | NA | 0.36777 |
| ESCA | TCGA-IG-A8O2-01A | TCGA-IG-A8O2 | PARD3|NRXN1 | PARD3 | NRXN1 | 10 | 2 | -1 | -1 | 8 | 48 | 46 | 0.47 | 34985246 | 50318632 | tier1 | In-frame | 12276 | NA | 0.37986 |
| ESCA | TCGA-L5-A88S-01A | TCGA-L5-A88S | PHC3|NCEH1 | PHC3 | NCEH1 | 3 | 3 | -1 | -1 | 5 | 22 | 17 | 0.24 | 169831148 | 172365904 | tier1 | Out-of-frame | 12692 | NA | 0.34731 |
| ESCA | TCGA-LN-A4A2-01A | TCGA-LN-A4A2 | PI4KA|SNAP29 | PI4KA | SNAP29 | 22 | 22 | -1 | 1 | 9 | 108 | 100 | 1 | 21212858 | 21224625 | tier1 | 5UTR-CDS | 12785 | NA | 0.36974 |
| ESCA | TCGA-L5-A43J-01A | TCGA-L5-A43J | PPP5C|AP2S1 | PPP5C | AP2S1 | 19 | 19 | 1 | -1 | 5 | 103 | 92 | 0.8 | 46857246 | 47349399 | tier1 | In-frame | 13444 | NA | 0.37661 |
| ESCA | TCGA-JY-A938-01A | TCGA-JY-A938 | PTPRK|ARHGAP18 | PTPRK | ARHGAP18 | 6 | 6 | -1 | -1 | 2 | 9 | 9 | 0.94 | 128505577 | 129939997 | tier2 | Out-of-frame | 13871 | NA | 0.37414 |
| ESCA | TCGA-JY-A938-01A | TCGA-JY-A938 | PTPRK|RSPO3 | PTPRK | RSPO3 | 6 | 6 | -1 | 1 | 9 | 60 | 51 | 0.049 | 128505577 | 127469793 | tier1 | In-frame | 13892 | NA | 0 |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | PTPRS|MBD3 | PTPRS | MBD3 | 19 | 19 | -1 | -1 | 3 | 15 | 13 | 0.19 | 5211601 | 1582711 | tier1 | Out-of-frame | 13916 | validated | 0 |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | R3HCC1|GRIK5 | R3HCC1 | GRIK5 | 8 | 19 | 1 | -1 | 4 | 7 | 7 | 0.77 | 23147982 | 42526506 | tier1 | In-frame | 14018 | non-validated | 0 |
| ESCA | TCGA-VR-A8EQ-01A | TCGA-VR-A8EQ | RALGAPB|KCNB1 | RALGAPB | KCNB1 | 20 | 20 | 1 | -1 | 5 | 100 | 95 | 0.19 | 37128276 | 47991529 | tier1 | Out-of-frame | 14230 | NA | 0 |
| ESCA | TCGA-LN-A7HW-01A | TCGA-LN-A7HW | RNF213|SLC26A11 | RNF213 | SLC26A11 | 17 | 17 | 1 | 1 | 2 | 5 | 5 | 0.56 | 78322086 | 78225128 | tier4 | In-frame | 14818 | NA | 0 |
| ESCA | TCGA-VR-A8EU-01A | TCGA-VR-A8EU | SGPP2|ABCA12 | SGPP2 | ABCA12 | 2 | 2 | 1 | -1 | 2 | 5 | 4 | 3.8 | 223289540 | 215882856 | tier4 | Out-of-frame | 15788 | NA | 0 |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | SLC41A1|C1orf159 | SLC41A1 | C1orf159 | 1 | 1 | -1 | -1 | 2 | 2 | 2 | 0.13 | 205779198 | 1027483 | tier2 | CDS-5UTR | 16221 | NA | 0 |
| ESCA | TCGA-L5-A4OQ-01A | TCGA-L5-A4OQ | SLC45A2|C1QTNF3 | SLC45A2 | C1QTNF3 | 5 | 5 | -1 | -1 | 2 | 4 | 4 | 4 | 33982341 | 34035863 | tier3 | Out-of-frame | 16235 | NA | 0 |
| ESCA | TCGA-R6-A8W5-01B | TCGA-R6-A8W5 | SLC7A7|ACIN1 | SLC7A7 | ACIN1 | 14 | 14 | -1 | -1 | 3 | 20 | 17 | 0.12 | 23282109 | 23533697 | tier1 | In-frame | 16295 | NA | 0 |
| ESCA | TCGA-L5-A43M-01A | TCGA-L5-A43M | SMAGP|TBC1D30 | SMAGP | TBC1D30 | 12 | 12 | -1 | 1 | 4 | 47 | 43 | 0.29 | 51663029 | 65237160 | tier1 | Out-of-frame | 16357 | NA | 0 |
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