TCSA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the GESPs in each cancer type

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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
ESCA	TCGA-2H-A9GQ-01A	TCGA-2H-A9GQ	IQGAP1\|ZNF774	IQGAP1	ZNF774	15	15	1	1	2	2	2	2.3	90934105	90897874	tier3	CDS-5UTR	8323	NA	0.38786
ESCA	TCGA-JY-A6FE-01A	TCGA-JY-A6FE	IQGAP1\|ZNF774	IQGAP1	ZNF774	15	15	1	1	2	14	14	2.3	90934105	90897874	tier4	CDS-5UTR	8326	NA	0.38786
ESCA	TCGA-2H-A9GJ-01A	TCGA-2H-A9GJ	KDM4A\|MPL	KDM4A	MPL	1	1	1	1	2	55	51	0.31	44169783	43805635	tier2	In-frame	8661	NA	0.36246
ESCA	TCGA-L5-A8NE-01A	TCGA-L5-A8NE	KHDC1\|SLC17A5	KHDC1	SLC17A5	6	6	-1	-1	5	16	16	0.004	74001721	74325170	tier1	Out-of-frame	8717	validated	0.33966
ESCA	TCGA-JY-A6F8-01A	TCGA-JY-A6F8	KIAA0247\|SLC39A9	KIAA0247	SLC39A9	14	14	1	1	16	82	77	0.056	70170309	69908786	tier1	In-frame	8768	NA	0.34143
ESCA	TCGA-2H-A9GH-01A	TCGA-2H-A9GH	LEPR\|MEF2D	LEPR	MEF2D	1	1	1	-1	2	8	8	1.8	66070920	156438812	tier2	In-frame	9296	NA	0.38374
ESCA	TCGA-L5-A891-01A	TCGA-L5-A891	LPHN1\|LGALS4	LPHN1	LGALS4	19	19	-1	-1	4	7	7	0.35	14288343	39299588	tier1	In-frame	9444	non-validated	0.36487
ESCA	TCGA-2H-A9GN-01A	TCGA-2H-A9GN	LRFN1\|DLL3	LRFN1	DLL3	19	19	-1	1	3	26	21	0.29	39804571	39993455	tier1	Out-of-frame	9494	NA	0.36269
ESCA	TCGA-LN-A49L-01A	TCGA-LN-A49L	LRFN3\|FXYD7	LRFN3	FXYD7	19	19	1	1	29	81	73	0.098	36428457	35639597	tier1	5UTR-CDS	9495	validated	0.35133
ESCA	TCGA-LN-A4A1-01A	TCGA-LN-A4A1	LRIG3\|RP11-362K2.2	LRIG3	RP11-362K2.2	12	12	-1	1	9	179	164	0.73	59307763	59206196	tier1	In-frame	9501	non-validated	0.34527
ESCA	TCGA-L5-A891-01A	TCGA-L5-A891	LSR\|NLRP2	LSR	NLRP2	19	19	1	1	5	15	13	0.024	35741562	55481367	tier1	CDS-5UTR	9638	non-validated	0.35387
ESCA	TCGA-L5-A891-01A	TCGA-L5-A891	MAP1S\|CEACAM6	MAP1S	CEACAM6	19	19	1	1	340	1408	1269	1.1	17835017	42270091	tier1	Out-of-frame	9828	validated	0.36658
ESCA	TCGA-L5-A4OO-01A	TCGA-L5-A4OO	MAP7\|NRG3	MAP7	NRG3	6	10	-1	1	3	2	2	0.12	136871480	84118495	tier1	In-frame	9923	NA	0.36314
ESCA	TCGA-Q9-A6FW-01A	TCGA-Q9-A6FW	MEF2A\|RP11-35N6.1	MEF2A	RP11-35N6.1	15	9	1	1	2	14	13	1.7	100138716	103947732	tier4	5UTR-5UTR	10234	NA	0.37269
ESCA	TCGA-V5-A7RE-01A	TCGA-V5-A7RE	MMD\|HDAC5	MMD	HDAC5	17	17	-1	-1	19	58	55	0.003	53499031	42165966	tier1	Out-of-frame	10541	NA	0.37248
ESCA	TCGA-R6-A6Y0-01B	TCGA-R6-A6Y0	MPP5\|GPHN	MPP5	GPHN	14	14	1	1	9	16	16	0.24	67784196	67555700	tier1	In-frame	10618	NA	0.36903
ESCA	TCGA-L5-A8NI-01A	TCGA-L5-A8NI	MSH2\|EPCAM	MSH2	EPCAM	2	2	1	1	21	203	157	0.77	47630541	47612305	tier1	Out-of-frame	10699	NA	0.36209
ESCA	TCGA-L5-A4OQ-01A	TCGA-L5-A4OQ	MYH14\|GPR19	MYH14	GPR19	19	12	1	-1	2	22	19	5.2	50714027	12848445	tier2	CDS-5UTR	10891	NA	0.36415
ESCA	TCGA-2H-A9GN-01A	TCGA-2H-A9GN	NCOR2\|SCARB1	NCOR2	SCARB1	12	12	-1	-1	20	116	100	0.08	125020111	125271049	tier1	5UTR-CDS	11252	NA	0.37966
ESCA	TCGA-L5-A43M-01A	TCGA-L5-A43M	NCOR2\|SCARB1	NCOR2	SCARB1	12	12	-1	-1	3	206	190	0.08	125020111	125302253	tier1	5UTR-CDS	11259	NA	0.37966

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