Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| ESCA | TCGA-L5-A4OS-01A | TCGA-L5-A4OS | DLG1|BDH1 | DLG1 | BDH1 | 3 | 3 | -1 | -1 | 13 | 57 | 51 | 2.2 | 197009550 | 197249652 | tier1 | In-frame | 4868 | NA | 0.37972 |
| ESCA | TCGA-JY-A6FE-01A | TCGA-JY-A6FE | DLG4|GAS7 | DLG4 | GAS7 | 17 | 17 | -1 | -1 | 3 | 1 | 1 | 0.03 | 7120437 | 9885201 | tier3 | Out-of-frame | 4885 | NA | 0.37431 |
| ESCA | TCGA-Q9-A6FW-01A | TCGA-Q9-A6FW | DMBT1|ARMS2 | DMBT1 | ARMS2 | 10 | 10 | 1 | 1 | 12 | 27 | 27 | 0.23 | 124380896 | 124216423 | tier1 | Out-of-frame | 4906 | NA | 0.3521 |
| ESCA | TCGA-JY-A6FD-01A | TCGA-JY-A6FD | DSP|LY86 | DSP | LY86 | 6 | 6 | 1 | 1 | 261 | 1223 | 1155 | 0.42 | 7542318 | 6649858 | tier1 | Out-of-frame | 5127 | NA | 0.36491 |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | EFHA1|CD101 | EFHA1 | CD101 | 13 | 1 | -1 | 1 | 2 | 4 | 4 | 0.84 | 22140936 | 117552472 | tier2 | In-frame | 5341 | NA | 0.35568 |
| ESCA | TCGA-L5-A88V-01A | TCGA-L5-A88V | ERBB2|PSMB3 | ERBB2 | PSMB3 | 17 | 17 | 1 | 1 | 1368 | 23559 | 21766 | 1.6 | 37876087 | 36916684 | tier1 | In-frame | 5727 | NA | 0.38625 |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | ERC1|WNK1 | ERC1 | WNK1 | 12 | 12 | 1 | 1 | 2 | 20 | 19 | 0.089 | 1213990 | 977032 | tier4 | In-frame | 5758 | NA | 0.37749 |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | ETHE1|PLAUR | ETHE1 | PLAUR | 19 | 19 | -1 | -1 | 5 | 34 | 34 | 0.015 | 44030667 | 44159725 | tier1 | In-frame | 5848 | NA | 0.37464 |
| ESCA | TCGA-L5-A4OQ-01A | TCGA-L5-A4OQ | FAM118A|UPK3A | FAM118A | UPK3A | 22 | 22 | 1 | 1 | 10 | 139 | 122 | 0.13 | 45706064 | 45689062 | tier1 | 5UTR-CDS | 6019 | NA | 0.33499 |
| ESCA | TCGA-V5-AASX-01A | TCGA-V5-AASX | FAM35A|SEZ6L2 | FAM35A | SEZ6L2 | 10 | 16 | 1 | -1 | 5 | 13 | 11 | 0.45 | 88856746 | 29897070 | tier1 | 5UTR-CDS | 6161 | NA | 0.35133 |
| ESCA | TCGA-L5-A4OQ-01A | TCGA-L5-A4OQ | FAM38A|CBFA2T3 | FAM38A | CBFA2T3 | 16 | 16 | -1 | -1 | 8 | 108 | 98 | 0.097 | 88815792 | 88968064 | tier1 | In-frame | 6166 | NA | 0.36329 |
| ESCA | TCGA-LN-A5U5-01A | TCGA-LN-A5U5 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 3 | 17 | 15 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6503 | non-validated | 0.38077 |
| ESCA | TCGA-LN-A9FO-01A | TCGA-LN-A9FO | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 23 | 403 | 244 | 0.12 | 1808661 | 1737458 | tier1 | In-frame | 6504 | NA | 0.38077 |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | GIPR|RBM42 | GIPR | RBM42 | 19 | 19 | 1 | 1 | 4 | 32 | 28 | 1.4 | 46173992 | 36128060 | tier2 | In-frame | 7074 | non-validated | 0.3707 |
| ESCA | TCGA-2H-A9GN-01A | TCGA-2H-A9GN | GNAI3|CYB561D1 | GNAI3 | CYB561D1 | 1 | 1 | 1 | 1 | 2 | 15 | 14 | 0.17 | 110129504 | 110037765 | tier2 | In-frame | 7173 | NA | 0.37261 |
| ESCA | TCGA-L5-A4OS-01A | TCGA-L5-A4OS | GNB1|C1orf222 | GNB1 | C1orf222 | 1 | 1 | -1 | -1 | 5 | 24 | 19 | 0.53 | 1822259 | 1897965 | tier1 | 5UTR-CDS | 7213 | NA | 0 |
| ESCA | TCGA-2H-A9GJ-01A | TCGA-2H-A9GJ | GOSR1|CPD | GOSR1 | CPD | 17 | 17 | 1 | 1 | 14 | 83 | 75 | 0.04 | 28811788 | 28788198 | tier1 | In-frame | 7302 | NA | 0.3539 |
| ESCA | TCGA-2H-A9GF-01A | TCGA-2H-A9GF | GRB7|C17orf37 | GRB7 | C17orf37 | 17 | 17 | 1 | -1 | 97 | 585 | 507 | 0.96 | 37898709 | 37886544 | tier1 | In-frame | 7412 | NA | 0 |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | HKR1|CEACAM7 | HKR1 | CEACAM7 | 19 | 19 | 1 | -1 | 4 | 11 | 10 | 3.1 | 37838774 | 42191152 | tier1 | In-frame | 7811 | non-validated | 0.36207 |
| ESCA | TCGA-JY-A6FH-01A | TCGA-JY-A6FH | IQGAP1|NGRN | IQGAP1 | NGRN | 15 | 15 | 1 | 1 | 6 | 34 | 33 | 1.2 | 90934105 | 90814420 | tier1 | In-frame | 8314 | NA | 0.38365 |
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