Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| DLBC | TCGA-GS-A9TV-01A | TCGA-GS-A9TV | GCN1L1|CD74 | GCN1L1 | CD74 | 12 | 5 | -1 | -1 | 2 | 2 | 2 | 0.53 | 120607973 | 149792314 | tier4 | CDS-5UTR | 7012 | NA | 0.36733 |
| DLBC | TCGA-GS-A9TQ-01A | TCGA-GS-A9TQ | KIAA0146|CSMD3 | KIAA0146 | CSMD3 | 8 | 8 | 1 | -1 | 6 | 7 | 6 | 0.15 | 48511758 | 113569183 | tier1 | Out-of-frame | 8733 | NA | 0.34443 |
| DLBC | TCGA-FF-8047-01A | TCGA-FF-8047 | PTBP1|PALM | PTBP1 | PALM | 19 | 19 | 1 | 1 | 18 | 7 | 7 | 1.2 | 804438 | 726138 | tier1 | Out-of-frame | 13747 | non-validated | 0.3736 |
| ESCA | TCGA-VR-A8EU-01A | TCGA-VR-A8EU | ABCA12|SGPP2 | ABCA12 | SGPP2 | 2 | 2 | -1 | 1 | 4 | 22 | 19 | 3.8 | 215890397 | 223339287 | tier1 | In-frame | 40 | NA | 0.34387 |
| ESCA | TCGA-R6-A8W5-01B | TCGA-R6-A8W5 | AGRN|ZC3H18 | AGRN | ZC3H18 | 1 | 16 | 1 | 1 | 20 | 198 | 177 | 0.08 | 980903 | 88664586 | tier1 | In-frame | 674 | NA | 0.34962 |
| ESCA | TCGA-2H-A9GQ-01A | TCGA-2H-A9GQ | ANKS1B|UHRF1BP1L | ANKS1B | UHRF1BP1L | 12 | 12 | -1 | -1 | 3 | 7 | 7 | 2.5 | 100377882 | 100444096 | tier1 | 5UTR-CDS | 1007 | NA | 0.37262 |
| ESCA | TCGA-IG-A3I8-01A | TCGA-IG-A3I8 | ANO1|RP11-680F20.9 | ANO1 | RP11-680F20.9 | 11 | 11 | 1 | -1 | 16 | 25 | 24 | 0.027 | 69972301 | 125796001 | tier1 | CDS-5UTR | 1024 | NA | 0.33747 |
| ESCA | TCGA-L5-A4OQ-01A | TCGA-L5-A4OQ | BAIAP2L2|TMEM184B | BAIAP2L2 | TMEM184B | 22 | 22 | -1 | -1 | 2 | 22 | 20 | 0.023 | 38493039 | 38627340 | tier2 | Out-of-frame | 1917 | NA | 0.34858 |
| ESCA | TCGA-L5-A4OS-01A | TCGA-L5-A4OS | CACNA1D|GNL3 | CACNA1D | GNL3 | 3 | 3 | 1 | 1 | 4 | 14 | 11 | 0.004 | 53804579 | 52724608 | tier1 | Out-of-frame | 2862 | NA | 0.36904 |
| ESCA | TCGA-XP-A8T6-01A | TCGA-XP-A8T6 | CCNY|ZNF248 | CCNY | ZNF248 | 10 | 10 | 1 | -1 | 3 | 6 | 6 | 0.06 | 35626135 | 38127039 | tier1 | Out-of-frame | 3240 | NA | 0.36118 |
| ESCA | TCGA-L5-A4OS-01A | TCGA-L5-A4OS | CDH3|C16orf70 | CDH3 | C16orf70 | 16 | 16 | 1 | 1 | 7 | 5 | 4 | 0.37 | 68679653 | 67154015 | tier1 | In-frame | 3390 | NA | 0 |
| ESCA | TCGA-LN-A8I0-01A | TCGA-LN-A8I0 | CDIPT|SEZ6L2 | CDIPT | SEZ6L2 | 16 | 16 | -1 | -1 | 2 | 15 | 11 | 0.007 | 29871902 | 29885050 | tier3 | Out-of-frame | 3396 | NA | 0.35188 |
| ESCA | TCGA-V5-A7RE-01A | TCGA-V5-A7RE | CLTC|USP32 | CLTC | USP32 | 17 | 17 | 1 | -1 | 57 | 164 | 154 | 0.56 | 57697534 | 58422969 | tier1 | Out-of-frame | 3867 | NA | 0.37516 |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | COL7A1|SLC26A6 | COL7A1 | SLC26A6 | 3 | 3 | -1 | -1 | 2 | 6 | 6 | 0.074 | 48630003 | 48665471 | tier2 | Out-of-frame | 4047 | NA | 0.36887 |
| ESCA | TCGA-L5-A4OQ-01A | TCGA-L5-A4OQ | CTNNA1|EGR1 | CTNNA1 | EGR1 | 5 | 5 | 1 | 1 | 9 | 113 | 109 | 0.12 | 138163407 | 137802446 | tier1 | Out-of-frame | 4348 | NA | 0.3817 |
| ESCA | TCGA-L5-A4OO-01A | TCGA-L5-A4OO | CTNND1|CLPB | CTNND1 | CLPB | 11 | 11 | 1 | -1 | 8 | 51 | 47 | 0.22 | 57577695 | 72091428 | tier4 | Out-of-frame | 4368 | NA | 0.38569 |
| ESCA | TCGA-IG-A3I8-01A | TCGA-IG-A3I8 | CTTN|KIRREL3 | CTTN | KIRREL3 | 11 | 11 | 1 | -1 | 7 | 203 | 185 | 0.13 | 70244720 | 126343361 | tier1 | 5UTR-CDS | 4417 | NA | 0.38257 |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | CUX1|EMID2 | CUX1 | EMID2 | 7 | 7 | 1 | 1 | 4 | 48 | 44 | 1.5 | 101559505 | 101176363 | tier1 | Out-of-frame | 4450 | NA | 0.37576 |
| ESCA | TCGA-R6-A6Y0-01B | TCGA-R6-A6Y0 | CYTH1|KCNJ4 | CYTH1 | KCNJ4 | 17 | 22 | -1 | -1 | 4 | 3 | 3 | 0.85 | 76778284 | 38824176 | tier1 | CDS-5UTR | 4510 | NA | 0.37313 |
| ESCA | TCGA-2H-A9GJ-01A | TCGA-2H-A9GJ | DDAH2|SLC44A4 | DDAH2 | SLC44A4 | 6 | 6 | -1 | -1 | 17 | 56 | 51 | 1.9 | 31697828 | 31833561 | tier1 | 5UTR-CDS | 4629 | NA | 0.34346 |
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