Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| COAD | TCGA-CM-5348-01A | TCGA-CM-5348 | SLCO3A1|ATPBD4 | SLCO3A1 | ATPBD4 | 15 | 15 | 1 | -1 | 7 | 4 | 3 | 1.5 | 92669489 | 35834708 | tier1 | In-frame | 16311 | NA | 0 |
| COAD | TCGA-AA-3655-01A | TCGA-AA-3655 | SRPK1|BAI3 | SRPK1 | BAI3 | 6 | 6 | -1 | 1 | 2 | 1 | 1 | 0.98 | 35888245 | 69347283 | tier2 | CDS-5UTR | 16864 | NA | 0 |
| COAD | TCGA-A6-2675-01A | TCGA-A6-2675 | TM9SF4|COMMD7 | TM9SF4 | COMMD7 | 20 | 20 | 1 | -1 | 15 | 10 | 10 | 0.95 | 30749168 | 31315949 | tier1 | In-frame | 17875 | NA | 0 |
| COAD | TCGA-CA-5254-01A | TCGA-CA-5254 | TMEM123|MMP20 | TMEM123 | MMP20 | 11 | 11 | -1 | -1 | 9 | 12 | 11 | 0.87 | 102319543 | 102464326 | tier1 | In-frame | 17950 | NA | 0 |
| COAD | TCGA-D5-6534-01A | TCGA-D5-6534 | TMEM216|KCNG3 | TMEM216 | KCNG3 | 11 | 2 | 1 | -1 | 7 | 5 | 5 | 3.2 | 61160151 | 42671719 | tier1 | 5UTR-CDS | 18011 | NA | 0 |
| COAD | TCGA-A6-6648-01A | TCGA-A6-6648 | TNFRSF14|TXLNA | TNFRSF14 | TXLNA | 1 | 1 | 1 | 1 | 14 | 5 | 3 | 0.025 | 2489907 | 32659666 | tier1 | Out-of-frame | 18339 | NA | 0 |
| COAD | TCGA-DM-A1D7-01A | TCGA-DM-A1D7 | TNFSF13B|RAB20 | TNFSF13B | RAB20 | 13 | 13 | 1 | -1 | 8 | 5 | 3 | 0.74 | 108922772 | 111176544 | tier2 | In-frame | 18344 | NA | 0 |
| COAD | TCGA-DM-A285-01A | TCGA-DM-A285 | TPT1|MYH9 | TPT1 | MYH9 | 13 | 22 | -1 | -1 | 2 | 38 | 1 | 1 | 45911008 | 36695088 | tier3 | 3UTR-CDS | 18509 | NA | 0 |
| COAD | TCGA-CK-6751-01A | TCGA-CK-6751 | TSPAN8|HSP90B1 | TSPAN8 | HSP90B1 | 12 | 12 | -1 | 1 | 2 | 43 | 6 | 1.9 | 71518880 | 104333287 | tier3 | 3UTR-CDS | 18805 | NA | 0 |
| COAD | TCGA-AA-A02K-01A | TCGA-AA-A02K | TTC17|API5 | TTC17 | API5 | 11 | 11 | 1 | 1 | 2 | 7 | 4 | 0.17 | 43380663 | 43340190 | tier3 | In-frame | 18828 | NA | 0 |
| COAD | TCGA-D5-6534-01A | TCGA-D5-6534 | USP4|SCRIB | USP4 | SCRIB | 3 | 8 | -1 | -1 | 5 | 2 | 2 | 0.6 | 49362135 | 144877700 | tier1 | Out-of-frame | 19388 | NA | 0 |
| COAD | TCGA-A6-2674-01A | TCGA-A6-2674 | VPS18|NTRK3 | VPS18 | NTRK3 | 15 | 15 | 1 | -1 | 6 | 5 | 5 | 2.8 | 41193212 | 88423659 | tier1 | In-frame | 19636 | NA | 0 |
| COAD | TCGA-QG-A5YX-01A | TCGA-QG-A5YX | ZNF460|C19orf18 | ZNF460 | C19orf18 | 19 | 19 | 1 | -1 | 83 | 63 | 51 | 1.5 | 57792204 | 58470085 | tier1 | Out-of-frame | 20511 | validated | 0 |
| DLBC | TCGA-GR-A4D9-01B | TCGA-GR-A4D9 | ACTG1|CXCR5 | ACTG1 | CXCR5 | 17 | 11 | -1 | 1 | 2 | 10 | 3 | 0.086 | 79476999 | 118754475 | tier4 | 3UTR-5UTR | 360 | NA | 0.37431 |
| DLBC | TCGA-GS-A9U3-01A | TCGA-GS-A9U3 | B2M|CCT5 | B2M | CCT5 | 15 | 5 | 1 | 1 | 2 | 1 | 1 | 0.46 | 45010359 | 10250033 | tier3 | 3UTR-5UTR | 1847 | NA | 0.37327 |
| DLBC | TCGA-FA-A86F-01A | TCGA-FA-A86F | C6orf72|PPIL4 | C6orf72 | PPIL4 | 6 | 6 | 1 | -1 | 6 | 9 | 8 | 0.56 | 149887670 | 149862567 | tier1 | In-frame | 2777 | NA | 0 |
| DLBC | TCGA-FA-A82F-01A | TCGA-FA-A82F | CD74|CXCR5 | CD74 | CXCR5 | 5 | 11 | -1 | 1 | 2 | 22 | 7 | 0.022 | 149781200 | 118754475 | tier3 | 3UTR-5UTR | 3289 | NA | 0.36705 |
| DLBC | TCGA-GR-A4D5-01A | TCGA-GR-A4D5 | CD74|SUPT16H | CD74 | SUPT16H | 5 | 14 | -1 | -1 | 2 | 54 | 10 | 0.007 | 149781200 | 21829491 | tier4 | 3UTR-CDS | 3297 | NA | 0.37847 |
| DLBC | TCGA-FF-A7CQ-01A | TCGA-FF-A7CQ | CD80|WDR52 | CD80 | WDR52 | 3 | 3 | -1 | -1 | 7 | 3 | 3 | 0.29 | 119276476 | 113152516 | tier1 | CDS-5UTR | 3300 | NA | 0.36946 |
| DLBC | TCGA-FA-A6HN-01A | TCGA-FA-A6HN | CXCR4|CFLAR | CXCR4 | CFLAR | 2 | 2 | -1 | 1 | 77 | 33 | 31 | 0.085 | 136875616 | 201994452 | tier1 | CDS-5UTR | 4478 | NA | 0.38823 |
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