Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| COAD | TCGA-AY-A8YK-01A | TCGA-AY-A8YK | PRKCA|TMEM100 | PRKCA | TMEM100 | 17 | 17 | 1 | -1 | 5 | 10 | 10 | 0.45 | 64492401 | 53805343 | tier1 | CDS-5UTR | 13554 | NA | 0.38211 |
| COAD | TCGA-CK-4948-01B | TCGA-CK-4948 | PSAP|TSPAN8 | PSAP | TSPAN8 | 10 | 12 | -1 | -1 | 2 | 21 | 1 | 1.9 | 73576056 | 71835367 | tier3 | 3UTR-5UTR | 13691 | NA | 0.35261 |
| COAD | TCGA-A6-6138-01A | TCGA-A6-6138 | PTK7|DENND4A | PTK7 | DENND4A | 6 | 15 | 1 | -1 | 3 | 1 | 1 | 1.1 | 43044305 | 66053776 | tier2 | CDS-5UTR | 13793 | NA | 0.36587 |
| COAD | TCGA-A6-2677-01B | TCGA-A6-2677 | PTPRA|CDK5RAP1 | PTPRA | CDK5RAP1 | 20 | 20 | 1 | -1 | 3 | 4 | 4 | 0.97 | 2854406 | 31975339 | tier1 | 5UTR-CDS | 13843 | non-validated | 0.37066 |
| COAD | TCGA-G4-6625-01A | TCGA-G4-6625 | PTPRK|BCKDHB | PTPRK | BCKDHB | 6 | 6 | -1 | 1 | 60 | 34 | 30 | 2.9 | 128841404 | 80837264 | tier1 | In-frame | 13872 | NA | 0.37231 |
| COAD | TCGA-CM-6164-01A | TCGA-CM-6164 | PTPRK|EPB41L2 | PTPRK | EPB41L2 | 6 | 6 | -1 | -1 | 39 | 18 | 16 | 0.024 | 128841404 | 131184858 | tier1 | Out-of-frame | 13876 | NA | 0 |
| COAD | TCGA-CA-5255-01A | TCGA-CA-5255 | PTPRK|RSPO3 | PTPRK | RSPO3 | 6 | 6 | -1 | 1 | 37 | 32 | 31 | 0.049 | 128841404 | 127469793 | tier1 | In-frame | 13887 | NA | 0 |
| COAD | TCGA-D5-6539-01A | TCGA-D5-6539 | PTPRK|RSPO3 | PTPRK | RSPO3 | 6 | 6 | -1 | 1 | 86 | 36 | 36 | 0.049 | 128841404 | 127469793 | tier1 | In-frame | 13888 | NA | 0 |
| COAD | TCGA-DM-A1HB-01A | TCGA-DM-A1HB | PTPRK|RSPO3 | PTPRK | RSPO3 | 6 | 6 | -1 | 1 | 65 | 71 | 63 | 0.049 | 128505577 | 127469793 | tier1 | In-frame | 13889 | NA | 0 |
| COAD | TCGA-QG-A5YX-01A | TCGA-QG-A5YX | PTPRK|RSPO3 | PTPRK | RSPO3 | 6 | 6 | -1 | 1 | 73 | 45 | 41 | 0.049 | 128841404 | 127469793 | tier1 | In-frame | 13893 | non-validated | 0 |
| COAD | TCGA-DM-A1D6-01A | TCGA-DM-A1D6 | PTPRM|ELP4 | PTPRM | ELP4 | 18 | 11 | 1 | 1 | 14 | 3 | 3 | 0.37 | 8143777 | 31804941 | tier2 | Out-of-frame | 13899 | NA | 0 |
| COAD | TCGA-NH-A5IV-01A | TCGA-NH-A5IV | RAMP1|RBM44 | RAMP1 | RBM44 | 2 | 2 | 1 | 1 | 20 | 9 | 7 | 100 | 238768370 | 238722235 | tier1 | CDS-5UTR | 14247 | NA | 0 |
| COAD | TCGA-DM-A28A-01A | TCGA-DM-A28A | RASA3|SCARA3 | RASA3 | SCARA3 | 13 | 8 | -1 | 1 | 5 | 3 | 3 | 0.004 | 114765061 | 27528417 | tier1 | Out-of-frame | 14361 | NA | 0 |
| COAD | TCGA-CK-5916-01A | TCGA-CK-5916 | RCC1|SERINC2 | RCC1 | SERINC2 | 1 | 1 | 1 | 1 | 3 | 3 | 2 | 0.21 | 28834672 | 31905814 | tier1 | 5UTR-CDS | 14507 | NA | 0 |
| COAD | TCGA-CM-6166-01A | TCGA-CM-6166 | RNF170|ADAM32 | RNF170 | ADAM32 | 8 | 8 | -1 | 1 | 6 | 7 | 6 | 0.38 | 42742871 | 39079129 | tier1 | Out-of-frame | 14784 | NA | 0 |
| COAD | TCGA-CA-6716-01A | TCGA-CA-6716 | RNF213|SLC26A11 | RNF213 | SLC26A11 | 17 | 17 | 1 | 1 | 8 | 4 | 4 | 0.56 | 78324196 | 78225128 | tier1 | Out-of-frame | 14815 | NA | 0 |
| COAD | TCGA-CM-6167-01A | TCGA-CM-6167 | RNF43|RARA | RNF43 | RARA | 17 | 17 | -1 | 1 | 4 | 2 | 2 | 0.052 | 56492687 | 38487109 | tier1 | CDS-5UTR | 14849 | NA | 0 |
| COAD | TCGA-F4-6461-01A | TCGA-F4-6461 | SIN3A|SEMA7A | SIN3A | SEMA7A | 15 | 15 | -1 | -1 | 5 | 3 | 2 | 0.23 | 75743764 | 74711293 | tier1 | 5UTR-CDS | 15936 | NA | 0 |
| COAD | TCGA-CM-6163-01A | TCGA-CM-6163 | SKIV2L2|PCDHGB4 | SKIV2L2 | PCDHGB4 | 5 | 5 | 1 | 1 | 25 | 9 | 8 | 0.68 | 54624639 | 140874374 | tier1 | Out-of-frame | 15996 | NA | 0 |
| COAD | TCGA-DM-A1HA-01A | TCGA-DM-A1HA | SLC23A2|CDS2 | SLC23A2 | CDS2 | 20 | 20 | -1 | 1 | 5 | 1 | 1 | 0.19 | 4982052 | 5163033 | tier2 | 5UTR-CDS | 16078 | NA | 0 |
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