Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| COAD | TCGA-AY-6196-01A | TCGA-AY-6196 | IQGAP1|SEMA4B | IQGAP1 | SEMA4B | 15 | 15 | 1 | 1 | 4 | 1 | 1 | 0.98 | 90934105 | 90760671 | tier3 | Out-of-frame | 8317 | NA | 0.38447 |
| COAD | TCGA-NH-A50V-01A | TCGA-NH-A50V | ITCH|SRC | ITCH | SRC | 20 | 20 | 1 | 1 | 4 | 3 | 3 | 3.7 | 32957276 | 35993607 | tier1 | 5UTR-5UTR | 8365 | non-validated | 0.39021 |
| COAD | TCGA-AY-A71X-01A | TCGA-AY-A71X | JPH1|LY96 | JPH1 | LY96 | 8 | 8 | -1 | 1 | 3 | 1 | 1 | 0.027 | 75149443 | 74922236 | tier3 | 3UTR-CDS | 8502 | NA | 0.35854 |
| COAD | TCGA-CA-6716-01A | TCGA-CA-6716 | KANK1|DOCK8 | KANK1 | DOCK8 | 9 | 9 | 1 | 1 | 14 | 16 | 14 | 1.8 | 677009 | 304581 | tier1 | Out-of-frame | 8515 | NA | 0.3629 |
| COAD | TCGA-AZ-6607-01A | TCGA-AZ-6607 | KCNK1|CCDC64 | KCNK1 | CCDC64 | 1 | 12 | 1 | 1 | 5 | 2 | 1 | 0.82 | 233750272 | 120509426 | tier2 | Out-of-frame | 8577 | NA | 0.35672 |
| COAD | TCGA-D5-5538-01A | TCGA-D5-5538 | KCNQ1|GALNTL6 | KCNQ1 | GALNTL6 | 11 | 4 | 1 | 1 | 29 | 19 | 18 | 0.44 | 2799267 | 173930329 | tier1 | In-frame | 8599 | NA | 0.3613 |
| COAD | TCGA-DM-A0XF-01A | TCGA-DM-A0XF | KCNQ1|SCT | KCNQ1 | SCT | 11 | 11 | 1 | -1 | 182 | 201 | 175 | 0.14 | 2549248 | 626530 | tier1 | Out-of-frame | 8602 | NA | 0.36096 |
| COAD | TCGA-CK-6746-01A | TCGA-CK-6746 | LSR|HDLBP | LSR | HDLBP | 19 | 2 | 1 | -1 | 2 | 3 | 2 | 0.52 | 35758865 | 242202277 | tier3 | NA | 9637 | NA | 0.35918 |
| COAD | TCGA-A6-5666-01A | TCGA-A6-5666 | LYN|VPS13B | LYN | VPS13B | 8 | 8 | 1 | 1 | 6 | 2 | 2 | 0.44 | 56792662 | 100513915 | tier1 | 5UTR-CDS | 9697 | NA | 0.38916 |
| COAD | TCGA-F4-6854-01A | TCGA-F4-6854 | MAP7|OPRM1 | MAP7 | OPRM1 | 6 | 6 | -1 | 1 | 3 | 3 | 3 | 0.028 | 136732758 | 154410961 | tier1 | Out-of-frame | 9924 | NA | 0.37293 |
| COAD | TCGA-CM-6675-01A | TCGA-CM-6675 | MED13L|PTPRR | MED13L | PTPRR | 12 | 12 | -1 | -1 | 28 | 11 | 10 | 1.2 | 116534474 | 71158558 | tier1 | Out-of-frame | 10185 | NA | 0.37726 |
| COAD | TCGA-G4-6322-01A | TCGA-G4-6322 | MIB1|MYO5B | MIB1 | MYO5B | 18 | 18 | 1 | -1 | 40 | 25 | 23 | 0.93 | 19438607 | 47406825 | tier1 | In-frame | 10334 | NA | 0.37744 |
| COAD | TCGA-AU-6004-01A | TCGA-AU-6004 | MPP5|GPHN | MPP5 | GPHN | 14 | 14 | 1 | 1 | 28 | 26 | 26 | 0.24 | 67708250 | 67525366 | tier1 | 5UTR-CDS | 10613 | NA | 0.36903 |
| COAD | TCGA-F4-6805-01A | TCGA-F4-6805 | MYH9|PLAT | MYH9 | PLAT | 22 | 8 | -1 | -1 | 2 | 10 | 10 | 0.72 | 36677327 | 42051245 | tier4 | NA | 10913 | NA | 0.38591 |
| COAD | TCGA-DM-A1D7-01A | TCGA-DM-A1D7 | NFYA|TREML2 | NFYA | TREML2 | 6 | 6 | 1 | -1 | 12 | 7 | 7 | 0.13 | 41058048 | 41162571 | tier1 | In-frame | 11529 | NA | 0.36933 |
| COAD | TCGA-D5-6924-01A | TCGA-D5-6924 | NNT|PRLR | NNT | PRLR | 5 | 5 | 1 | -1 | 2 | 2 | 2 | 0.78 | 43628489 | 35072846 | tier3 | In-frame | 11627 | NA | 0.3738 |
| COAD | TCGA-G4-6323-01A | TCGA-G4-6323 | OLFM4|CLCN3 | OLFM4 | CLCN3 | 13 | 4 | 1 | 1 | 2 | 19 | 9 | 0.2 | 53626192 | 170623929 | tier3 | NA | 12029 | NA | 0.36625 |
| COAD | TCGA-G4-6293-01A | TCGA-G4-6293 | OLFM4|DYNC1H1 | OLFM4 | DYNC1H1 | 13 | 14 | 1 | 1 | 2 | 1 | 1 | 1.5 | 53626192 | 102449356 | tier3 | 3UTR-CDS | 12030 | NA | 0.35992 |
| COAD | TCGA-AA-A02Y-01A | TCGA-AA-A02Y | OLFM4|STAT6 | OLFM4 | STAT6 | 13 | 12 | 1 | -1 | 2 | 73 | 26 | 0.42 | 53626192 | 57496773 | tier4 | NA | 12031 | non-validated | 0.3742 |
| COAD | TCGA-AA-3712-01A | TCGA-AA-3712 | PAN3|FLT3 | PAN3 | FLT3 | 13 | 13 | 1 | -1 | 11 | 17 | 16 | 0.19 | 28752072 | 28644749 | tier1 | Out-of-frame | 12230 | NA | 0.3767 |
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