Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| COAD | TCGA-AZ-6601-01A | TCGA-AZ-6601 | CSNK1D|SECTM1 | CSNK1D | SECTM1 | 17 | 17 | -1 | -1 | 24 | 27 | 25 | 0.57 | 80223562 | 80280887 | tier1 | In-frame | 4284 | non-validated | 0.38008 |
| COAD | TCGA-A6-A566-01A | TCGA-A6-A566 | CTNND1|BTBD18 | CTNND1 | BTBD18 | 11 | 11 | 1 | -1 | 4 | 2 | 2 | 0.2 | 57529591 | 57518708 | tier1 | 5UTR-5UTR | 4367 | non-validated | 0.3799 |
| COAD | TCGA-AD-6899-01A | TCGA-AD-6899 | CWC25|JUP | CWC25 | JUP | 17 | 17 | -1 | -1 | 30 | 21 | 20 | 0.29 | 36981419 | 39915122 | tier1 | In-frame | 4462 | NA | 0.36584 |
| COAD | TCGA-G4-6297-01A | TCGA-G4-6297 | DLG1|BBX | DLG1 | BBX | 3 | 3 | -1 | 1 | 2 | 1 | 1 | 0.038 | 197023217 | 107364683 | tier3 | CDS-5UTR | 4866 | NA | 0.38004 |
| COAD | TCGA-D5-6929-01A | TCGA-D5-6929 | DNM1L|TSPAN11 | DNM1L | TSPAN11 | 12 | 12 | 1 | 1 | 9 | 3 | 1 | 3.2 | 32832399 | 31106915 | tier2 | CDS-5UTR | 4966 | NA | 0.36659 |
| COAD | TCGA-QL-A97D-01A | TCGA-QL-A97D | DOCK9|USH2A | DOCK9 | USH2A | 13 | 1 | -1 | -1 | 4 | 3 | 3 | 0.035 | 99607689 | 215812580 | tier1 | Out-of-frame | 5050 | NA | 0.3678 |
| COAD | TCGA-DM-A0X9-01A | TCGA-DM-A0X9 | DSP|HDLBP | DSP | HDLBP | 6 | 2 | 1 | -1 | 29 | 15 | 13 | 0.64 | 7575721 | 242170359 | tier1 | Out-of-frame | 5126 | NA | 0.36329 |
| COAD | TCGA-NH-A8F7-01A | TCGA-NH-A8F7 | EPB41L1|BICD1 | EPB41L1 | BICD1 | 20 | 12 | 1 | 1 | 6 | 7 | 7 | 9.3 | 34700402 | 32446928 | tier1 | 5UTR-CDS | 5637 | NA | 0.367 |
| COAD | TCGA-G4-6323-01A | TCGA-G4-6323 | EPB41L1|NNAT | EPB41L1 | NNAT | 20 | 20 | 1 | 1 | 2 | 1 | 1 | 1.3 | 34800298 | 36151069 | tier3 | In-frame | 5642 | NA | 0.36665 |
| COAD | TCGA-AY-6196-01A | TCGA-AY-6196 | EPB41L2|MAP4K1 | EPB41L2 | MAP4K1 | 6 | 19 | -1 | -1 | 6 | 3 | 3 | 1.5 | 131384295 | 39078457 | tier1 | 5UTR-CDS | 5649 | NA | 0.38539 |
| COAD | TCGA-G4-6317-02A | TCGA-G4-6317 | EPB41L2|STAT3 | EPB41L2 | STAT3 | 6 | 17 | -1 | -1 | 45 | 44 | 41 | 0.019 | 131384295 | 40474512 | tier1 | 5UTR-CDS | 5651 | NA | 0.38621 |
| COAD | TCGA-D5-6531-01A | TCGA-D5-6531 | ERBB2|DNAJC7 | ERBB2 | DNAJC7 | 17 | 17 | 1 | -1 | 32 | 21 | 18 | 0.35 | 37844531 | 40134419 | tier1 | 5UTR-CDS | 5719 | NA | 0.39024 |
| COAD | TCGA-CK-5913-01A | TCGA-CK-5913 | ETV6|NTRK3 | ETV6 | NTRK3 | 12 | 15 | 1 | -1 | 26 | 26 | 20 | 5.5 | 12022903 | 88483984 | tier1 | In-frame | 5870 | NA | 0.39062 |
| COAD | TCGA-CK-5916-01A | TCGA-CK-5916 | ETV6|NTRK3 | ETV6 | NTRK3 | 12 | 15 | 1 | -1 | 12 | 8 | 8 | 5.5 | 12022903 | 88483984 | tier1 | In-frame | 5871 | NA | 0.39062 |
| COAD | TCGA-D5-5538-01A | TCGA-D5-5538 | FAT1|NPY1R | FAT1 | NPY1R | 4 | 4 | -1 | -1 | 3 | 1 | 1 | 1.6 | 187647508 | 164247857 | tier2 | 5UTR-5UTR | 6270 | NA | 0.37038 |
| COAD | TCGA-AY-6196-01A | TCGA-AY-6196 | GNA14|TNFSF8 | GNA14 | TNFSF8 | 9 | 9 | -1 | -1 | 2 | 1 | 1 | 2 | 80262586 | 117680418 | tier3 | Out-of-frame | 7171 | NA | 0.36541 |
| COAD | TCGA-RU-A8FL-01A | TCGA-RU-A8FL | GRSF1|ELFN2 | GRSF1 | ELFN2 | 4 | 22 | -1 | -1 | 12 | 11 | 10 | 0.57 | 71698024 | 37772036 | tier1 | CDS-5UTR | 7476 | NA | 0.34535 |
| COAD | TCGA-CK-5915-01A | TCGA-CK-5915 | HTATSF1|BRS3 | HTATSF1 | BRS3 | X | X | 1 | 1 | 31 | 23 | 22 | 0.3 | 135586622 | 135572292 | tier1 | Out-of-frame | 8023 | NA | 0.3803 |
| COAD | TCGA-CA-5254-01A | TCGA-CA-5254 | IFIT5|HK1 | IFIT5 | HK1 | 10 | 10 | 1 | 1 | 7 | 18 | 16 | 0.57 | 91174560 | 71103583 | tier1 | Out-of-frame | 8061 | NA | 0.35578 |
| COAD | TCGA-AZ-4323-01A | TCGA-AZ-4323 | IGSF3|SYCP1 | IGSF3 | SYCP1 | 1 | 1 | -1 | 1 | 6 | 3 | 3 | 0.91 | 117208906 | 115489867 | tier1 | Out-of-frame | 8133 | NA | 0.34901 |
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