Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CHOL | TCGA-W5-AA2X-01A | TCGA-W5-AA2X | SLC29A2|RAB6A | SLC29A2 | RAB6A | 11 | 11 | -1 | -1 | 39 | 52 | 48 | 0.98 | 66133407 | 73390765 | tier1 | In-frame | 16125 | NA | 0 |
| CHOL | TCGA-3X-AAVB-01A | TCGA-3X-AAVB | TRIB3|SLC24A3 | TRIB3 | SLC24A3 | 20 | 20 | 1 | 1 | 10 | 3 | 3 | 4.2 | 372223 | 19496132 | tier1 | Out-of-frame | 18607 | NA | 0 |
| COAD | TCGA-AZ-6606-01A | TCGA-AZ-6606 | AC113191.1|CHRNA6 | AC113191.1 | CHRNA6 | 8 | 8 | 1 | -1 | 24 | 26 | 24 | 1.9 | 42958973 | 42620347 | tier1 | Out-of-frame | 215 | NA | 0.34066 |
| COAD | TCGA-AZ-6605-01A | TCGA-AZ-6605 | ACE2|GPR143 | ACE2 | GPR143 | X | X | -1 | -1 | 112 | 50 | 47 | 0.76 | 15596212 | 9693880 | tier1 | In-frame | 257 | NA | 0.35036 |
| COAD | TCGA-D5-6541-01A | TCGA-D5-6541 | ADAP1|GET4 | ADAP1 | GET4 | 7 | 7 | -1 | 1 | 3 | 6 | 5 | 0.37 | 959605 | 925693 | tier1 | Out-of-frame | 452 | NA | 0.37238 |
| COAD | TCGA-D5-6536-01A | TCGA-D5-6536 | ANK3|ACTA2 | ANK3 | ACTA2 | 10 | 10 | -1 | -1 | 14 | 9 | 9 | 0.92 | 62374944 | 90697999 | tier1 | Out-of-frame | 902 | NA | 0.37932 |
| COAD | TCGA-CM-5868-01A | TCGA-CM-5868 | ANO6|PEBP4 | ANO6 | PEBP4 | 12 | 8 | 1 | -1 | 6 | 4 | 4 | 0.65 | 45610174 | 22675248 | tier1 | Out-of-frame | 1036 | NA | 0.35846 |
| COAD | TCGA-AD-6901-01A | TCGA-AD-6901 | ARHGEF18|MAPKAP1 | ARHGEF18 | MAPKAP1 | 19 | 9 | 1 | -1 | 10 | 4 | 4 | 0.017 | 7506938 | 128230388 | tier1 | In-frame | 1308 | NA | 0.36269 |
| COAD | TCGA-AY-6196-01A | TCGA-AY-6196 | ATG5|GPR126 | ATG5 | GPR126 | 6 | 6 | -1 | 1 | 4 | 3 | 3 | 0.23 | 106756239 | 142736106 | tier1 | Out-of-frame | 1632 | NA | 0.3598 |
| COAD | TCGA-A6-5656-01A | TCGA-A6-5656 | ATP11A|CYHR1 | ATP11A | CYHR1 | 13 | 8 | 1 | -1 | 2 | 1 | 1 | 0.046 | 113530255 | 145678843 | tier2 | In-frame | 1669 | non-validated | 0.35249 |
| COAD | TCGA-D5-5540-01A | TCGA-D5-5540 | ATP13A3|DNAJC13 | ATP13A3 | DNAJC13 | 3 | 3 | -1 | 1 | 15 | 24 | 21 | 0.61 | 194206523 | 132219638 | tier1 | NA | 1687 | NA | 0.34568 |
| COAD | TCGA-CK-4952-01A | TCGA-CK-4952 | ATP1A1|DDX21 | ATP1A1 | DDX21 | 1 | 10 | 1 | 1 | 2 | 8 | 8 | 2.2 | 116947394 | 70723858 | tier4 | NA | 1690 | NA | 0.37023 |
| COAD | TCGA-CM-5348-01A | TCGA-CM-5348 | ATP5A1|HAUS1 | ATP5A1 | HAUS1 | 18 | 18 | -1 | 1 | 11 | 4 | 4 | 1.1 | 43684103 | 43698147 | tier1 | 5UTR-CDS | 1735 | NA | 0.36918 |
| COAD | TCGA-CM-5348-01A | TCGA-CM-5348 | ATPBD4|SHC4 | ATPBD4 | SHC4 | 15 | 15 | -1 | -1 | 2 | 23 | 22 | 0.009 | 35838320 | 49127219 | tier3 | Out-of-frame | 1783 | NA | 0.35274 |
| COAD | TCGA-AY-6196-01A | TCGA-AY-6196 | C14orf37|RSPO2 | C14orf37 | RSPO2 | 14 | 8 | -1 | -1 | 3 | 4 | 2 | 0.21 | 58764673 | 109095035 | tier1 | 5UTR-5UTR | 2460 | NA | 0 |
| COAD | TCGA-CM-5348-01A | TCGA-CM-5348 | C15orf41|SLCO3A1 | C15orf41 | SLCO3A1 | 15 | 15 | 1 | 1 | 11 | 6 | 6 | 1.6 | 36872162 | 92663695 | tier1 | Out-of-frame | 2475 | NA | 0 |
| COAD | TCGA-D5-6929-01A | TCGA-D5-6929 | C18orf10|DSG1 | C18orf10 | DSG1 | 18 | 18 | -1 | 1 | 16 | 5 | 5 | 4.5 | 34398857 | 28906544 | tier2 | In-frame | 2540 | NA | 0 |
| COAD | TCGA-5M-AATA-01A | TCGA-5M-AATA | CDK13|RALA | CDK13 | RALA | 7 | 7 | 1 | 1 | 9 | 4 | 4 | 0.21 | 40041630 | 39745722 | tier1 | Out-of-frame | 3415 | NA | 0.37579 |
| COAD | TCGA-DM-A288-01A | TCGA-DM-A288 | CHD1|RGMB | CHD1 | RGMB | 5 | 5 | -1 | 1 | 30 | 25 | 23 | 0.28 | 98215256 | 98128789 | tier1 | In-frame | 3611 | NA | 0.36754 |
| COAD | TCGA-CA-5254-01A | TCGA-CA-5254 | CLTC|CEP95 | CLTC | CEP95 | 17 | 17 | 1 | 1 | 168 | 80 | 76 | 0.75 | 57739004 | 62532720 | tier1 | In-frame | 3860 | NA | 0.36875 |
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