Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 90 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CESC | TCGA-C5-A7X5-01A | TCGA-C5-A7X5 | WARS2|TMEM87B | WARS2 | TMEM87B | 1 | 2 | -1 | 1 | 2 | 4 | 4 | 1.8 | 119618973 | 112832489 | tier2 | In-frame | 19715 | NA | 0 |
| CESC | TCGA-C5-A7X3-01A | TCGA-C5-A7X3 | WEE1|CHRNA3 | WEE1 | CHRNA3 | 11 | 15 | 1 | -1 | 8 | 8 | 7 | 0.4 | 9608403 | 78894606 | tier1 | In-frame | 19826 | NA | 0 |
| CESC | TCGA-VS-A8Q9-01A | TCGA-VS-A8Q9 | ZNF763|TEX101 | ZNF763 | TEX101 | 19 | 19 | 1 | 1 | 28 | 1 | 1 | 0.26 | 12036088 | 43920033 | tier2 | In-frame | 20654 | NA | 0 |
| CHOL | TCGA-3X-AAVE-01A | TCGA-3X-AAVE | ACSS1|CDH4 | ACSS1 | CDH4 | 20 | 20 | -1 | 1 | 3 | 2 | 1 | 0.57 | 25028721 | 60318619 | tier3 | Out-of-frame | 321 | NA | 0.35715 |
| CHOL | TCGA-YR-A95A-01A | TCGA-YR-A95A | ARHGAP35|SLC1A5 | ARHGAP35 | SLC1A5 | 19 | 19 | 1 | -1 | 7 | 5 | 5 | 0.021 | 47492932 | 47282165 | tier1 | Out-of-frame | 1251 | NA | 0.35032 |
| CHOL | TCGA-W5-AA30-01A | TCGA-W5-AA30 | BAZ2B|PLA2R1 | BAZ2B | PLA2R1 | 2 | 2 | -1 | -1 | 4 | 1 | 1 | 0.21 | 160412334 | 160885474 | tier3 | 5UTR-CDS | 1947 | NA | 0.36728 |
| CHOL | TCGA-W5-AA2W-01A | TCGA-W5-AA2W | BICC1|FGFR2 | BICC1 | FGFR2 | 10 | 10 | 1 | -1 | 46 | 21 | 20 | 0.91 | 60563002 | 123239535 | tier1 | In-frame | 2090 | NA | 0.38308 |
| CHOL | TCGA-W5-AA2H-01A | TCGA-W5-AA2H | CD74|DDX27 | CD74 | DDX27 | 5 | 20 | -1 | 1 | 2 | 40 | 11 | 0.16 | 149781200 | 47849303 | tier3 | NA | 3290 | NA | 0.3704 |
| CHOL | TCGA-W5-AA38-01A | TCGA-W5-AA38 | CDH17|RAD54B | CDH17 | RAD54B | 8 | 8 | -1 | -1 | 15 | 3 | 3 | 0.12 | 95160972 | 95423543 | tier1 | In-frame | 3383 | NA | 0.37989 |
| CHOL | TCGA-W5-AA2W-01A | TCGA-W5-AA2W | FGFR2|BICC1 | FGFR2 | BICC1 | 10 | 10 | -1 | 1 | 502 | 365 | 353 | 0.91 | 123243212 | 60566344 | tier1 | In-frame | 6462 | NA | 0.38308 |
| CHOL | TCGA-ZH-A8Y5-01A | TCGA-ZH-A8Y5 | FGFR2|BICC1 | FGFR2 | BICC1 | 10 | 10 | -1 | 1 | 179 | 143 | 128 | 0.91 | 123243212 | 60461834 | tier1 | In-frame | 6463 | NA | 0.38308 |
| CHOL | TCGA-W5-AA2Z-01A | TCGA-W5-AA2Z | FGFR2|C10orf118 | FGFR2 | C10orf118 | 10 | 10 | -1 | -1 | 92 | 93 | 91 | 0.098 | 123243212 | 115910979 | tier1 | In-frame | 6464 | NA | 0 |
| CHOL | TCGA-W5-AA2Q-01A | TCGA-W5-AA2Q | FGFR2|KIAA1598 | FGFR2 | KIAA1598 | 10 | 10 | -1 | -1 | 790 | 445 | 408 | 0.19 | 123243212 | 118708508 | tier1 | In-frame | 6468 | NA | 0.38149 |
| CHOL | TCGA-W5-AA2Q-01A | TCGA-W5-AA2Q | GPC6|GPC5 | GPC6 | GPC5 | 13 | 13 | 1 | 1 | 5 | 4 | 4 | 3.3 | 93879869 | 92797083 | tier1 | Out-of-frame | 7334 | NA | 0.34681 |
| CHOL | TCGA-W5-AA39-01A | TCGA-W5-AA39 | IL1RAP|SIRPG | IL1RAP | SIRPG | 3 | 20 | 1 | -1 | 7 | 6 | 4 | 3.6 | 190347287 | 1630054 | tier1 | CDS-5UTR | 8171 | NA | 0.37081 |
| CHOL | TCGA-W5-AA34-01A | TCGA-W5-AA34 | LPAR1|EIF2C3 | LPAR1 | EIF2C3 | 9 | 1 | -1 | 1 | 4 | 1 | 1 | 1.6 | 113703701 | 36499775 | tier2 | In-frame | 9435 | NA | 0.36516 |
| CHOL | TCGA-W6-AA0S-01A | TCGA-W6-AA0S | NRAS|CLDN14 | NRAS | CLDN14 | 1 | 21 | -1 | -1 | 16 | 11 | 11 | 0.31 | 115258671 | 37834074 | tier1 | CDS-5UTR | 11732 | NA | 0.37755 |
| CHOL | TCGA-ZH-A8Y1-01A | TCGA-ZH-A8Y1 | PTPRK|SMNDC1 | PTPRK | SMNDC1 | 6 | 10 | -1 | -1 | 148 | 107 | 102 | 0.45 | 128561180 | 112058548 | tier4 | In-frame | 13896 | NA | 0 |
| CHOL | TCGA-W5-AA2X-01A | TCGA-W5-AA2X | RAB3IP|BEST3 | RAB3IP | BEST3 | 12 | 12 | 1 | -1 | 12 | 11 | 11 | 1.2 | 70178595 | 70072673 | tier2 | Out-of-frame | 14094 | NA | 0 |
| CHOL | TCGA-W5-AA31-01A | TCGA-W5-AA31 | RNMTL1|ALOX15B | RNMTL1 | ALOX15B | 17 | 17 | 1 | 1 | 10 | 3 | 3 | 0.17 | 691372 | 7942704 | tier1 | Out-of-frame | 14863 | NA | 0 |
|
Showing page 90 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.