Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CESC | TCGA-UC-A7PG-01A | TCGA-UC-A7PG | SLC1A5|AP2A1 | SLC1A5 | AP2A1 | 19 | 19 | -1 | 1 | 2 | 7 | 6 | 0.36 | 47285640 | 50285014 | tier2 | Out-of-frame | 16049 | NA | 0 |
| CESC | TCGA-EA-A410-01A | TCGA-EA-A410 | SLC1A5|UBTF | SLC1A5 | UBTF | 19 | 17 | -1 | -1 | 2 | 5 | 2 | 1.8 | 47278142 | 42288699 | tier3 | NA | 16052 | NA | 0 |
| CESC | TCGA-VS-A8QF-01A | TCGA-VS-A8QF | SLC2A9|CCDC84 | SLC2A9 | CCDC84 | 4 | 11 | -1 | 1 | 5 | 5 | 5 | 0.99 | 9982216 | 118869140 | tier1 | In-frame | 16139 | NA | 0 |
| CESC | TCGA-VS-A9V0-01A | TCGA-VS-A9V0 | SLC9A3R1|RAB37 | SLC9A3R1 | RAB37 | 17 | 17 | 1 | 1 | 7 | 2 | 2 | 0.077 | 72759659 | 72725395 | tier1 | Out-of-frame | 16299 | NA | 0 |
| CESC | TCGA-EA-A3HS-01A | TCGA-EA-A3HS | SPINT1|ANXA1 | SPINT1 | ANXA1 | 15 | 9 | 1 | 1 | 2 | 21 | 14 | 2.9 | 41149852 | 75772570 | tier3 | 3UTR-5UTR | 16730 | NA | 0 |
| CESC | TCGA-EK-A2PM-01A | TCGA-EK-A2PM | SRGAP1|BACE2 | SRGAP1 | BACE2 | 12 | 21 | 1 | 1 | 3 | 1 | 1 | 0.95 | 64238663 | 42598193 | tier3 | Out-of-frame | 16840 | NA | 0 |
| CESC | TCGA-VS-A957-01A | TCGA-VS-A957 | SRGAP2|KCNJ10 | SRGAP2 | KCNJ10 | 1 | 1 | 1 | -1 | 2 | 1 | 1 | 0.093 | 206610392 | 160012322 | tier3 | NA | 16847 | NA | 0 |
| CESC | TCGA-VS-A9UO-01A | TCGA-VS-A9UO | SRGAP3|ITPR1 | SRGAP3 | ITPR1 | 3 | 3 | -1 | 1 | 5 | 5 | 4 | 0.021 | 9032196 | 4808214 | tier1 | In-frame | 16850 | NA | 0 |
| CESC | TCGA-C5-A1MQ-01A | TCGA-C5-A1MQ | TALDO1|EPS8L2 | TALDO1 | EPS8L2 | 11 | 11 | 1 | 1 | 3 | 5 | 2 | 0.16 | 747578 | 720062 | tier1 | Out-of-frame | 17359 | non-validated | 0 |
| CESC | TCGA-EA-A556-01A | TCGA-EA-A556 | TEX2|BCAM | TEX2 | BCAM | 17 | 19 | -1 | 1 | 22 | 8 | 5 | 1.5 | 62248460 | 45314482 | tier1 | In-frame | 17684 | NA | 0 |
| CESC | TCGA-ZJ-AAXN-01A | TCGA-ZJ-AAXN | TGFBI|ANXA1 | TGFBI | ANXA1 | 5 | 9 | 1 | 1 | 2 | 72 | 1 | 2.7 | 135399504 | 75772570 | tier3 | 3UTR-5UTR | 17736 | NA | 0 |
| CESC | TCGA-DS-A1OC-01A | TCGA-DS-A1OC | TMEM184B|CSNK1E | TMEM184B | CSNK1E | 22 | 22 | -1 | -1 | 2 | 6 | 6 | 0.029 | 38668890 | 38699253 | tier3 | 5UTR-CDS | 18000 | NA | 0 |
| CESC | TCGA-C5-A7X5-01A | TCGA-C5-A7X5 | TMEM87B|MERTK | TMEM87B | MERTK | 2 | 2 | 1 | 1 | 126 | 99 | 95 | 0.21 | 112813333 | 112751828 | tier1 | In-frame | 18060 | NA | 0 |
| CESC | TCGA-VS-A94W-01A | TCGA-VS-A94W | TNFRSF1A|SCNN1A | TNFRSF1A | SCNN1A | 12 | 12 | -1 | -1 | 12 | 4 | 3 | 0.28 | 6442903 | 6465046 | tier1 | Out-of-frame | 18341 | NA | 0 |
| CESC | TCGA-EK-A2PM-01A | TCGA-EK-A2PM | TRA2A|AQP1 | TRA2A | AQP1 | 7 | 7 | -1 | 1 | 129 | 66 | 62 | 0.015 | 23571408 | 30961681 | tier1 | In-frame | 18533 | NA | 0 |
| CESC | TCGA-C5-A8XK-01A | TCGA-C5-A8XK | TRPM4|PPFIA3 | TRPM4 | PPFIA3 | 19 | 19 | 1 | 1 | 4 | 6 | 4 | 0.056 | 49675365 | 49636258 | tier4 | Out-of-frame | 18728 | NA | 0 |
| CESC | TCGA-IR-A3LI-01A | TCGA-IR-A3LI | TRPV4|GIT2 | TRPV4 | GIT2 | 12 | 12 | -1 | -1 | 16 | 12 | 12 | 0.015 | 110230168 | 110391039 | tier1 | In-frame | 18740 | NA | 0 |
| CESC | TCGA-C5-A1MQ-01A | TCGA-C5-A1MQ | UBA2|GPI | UBA2 | GPI | 19 | 19 | 1 | 1 | 27 | 26 | 22 | 0.46 | 34919475 | 34869839 | tier1 | In-frame | 19022 | non-validated | 0 |
| CESC | TCGA-DS-A0VL-01A | TCGA-DS-A0VL | USP25|CYYR1 | USP25 | CYYR1 | 21 | 21 | 1 | -1 | 7 | 7 | 7 | 2 | 17191165 | 27840953 | tier1 | CDS-3UTR | 19339 | validated | 0 |
| CESC | TCGA-DS-A1OD-01A | TCGA-DS-A1OD | VAMP1|CD27 | VAMP1 | CD27 | 12 | 12 | -1 | 1 | 24 | 14 | 14 | 0.57 | 6579696 | 6554590 | tier1 | 5UTR-CDS | 19496 | NA | 0 |
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