Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CESC | TCGA-VS-A8QC-01A | TCGA-VS-A8QC | PTPN13|C4orf36 | PTPN13 | C4orf36 | 4 | 4 | 1 | -1 | 63 | 190 | 164 | 0.2 | 87656899 | 87797596 | tier1 | CDS-3UTR | 13822 | NA | 0 |
| CESC | TCGA-IR-A3LH-01A | TCGA-IR-A3LH | PTPRF|NDUFV1 | PTPRF | NDUFV1 | 1 | 11 | 1 | 1 | 2 | 11 | 11 | 0.13 | 44089334 | 67375697 | tier3 | NA | 13857 | NA | 0.37956 |
| CESC | TCGA-ZJ-A8QR-01A | TCGA-ZJ-A8QR | RAB11A|PPP6R3 | RAB11A | PPP6R3 | 15 | 11 | 1 | 1 | 116 | 55 | 50 | 0.9 | 66161963 | 68377372 | tier1 | Out-of-frame | 14037 | NA | 0 |
| CESC | TCGA-EK-A2RO-01A | TCGA-EK-A2RO | RAB7A|ANXA1 | RAB7A | ANXA1 | 3 | 9 | 1 | 1 | 2 | 75 | 40 | 0.18 | 128533639 | 75772570 | tier3 | 3UTR-5UTR | 14124 | NA | 0 |
| CESC | TCGA-UC-A7PF-01A | TCGA-UC-A7PF | RALY|SLC24A3 | RALY | SLC24A3 | 20 | 20 | 1 | 1 | 7 | 5 | 1 | 0.88 | 32581937 | 19560644 | tier4 | 5UTR-CDS | 14244 | NA | 0 |
| CESC | TCGA-BI-A0VS-01A | TCGA-BI-A0VS | RASSF8|ETNK1 | RASSF8 | ETNK1 | 12 | 12 | 1 | 1 | 32 | 19 | 16 | 0.44 | 26148063 | 22796697 | tier1 | 5UTR-CDS | 14391 | NA | 0 |
| CESC | TCGA-VS-A9UB-01A | TCGA-VS-A9UB | RBM33|PTPRN2 | RBM33 | PTPRN2 | 7 | 7 | 1 | -1 | 7 | 1 | 1 | 0.14 | 155465609 | 157997965 | tier2 | Out-of-frame | 14460 | NA | 0 |
| CESC | TCGA-C5-A7X5-01A | TCGA-C5-A7X5 | ROBO1|MYO1D | ROBO1 | MYO1D | 3 | 17 | -1 | -1 | 6 | 2 | 1 | 1.4 | 79067557 | 31107802 | tier2 | Out-of-frame | 14869 | NA | 0 |
| CESC | TCGA-EA-A3HS-01A | TCGA-EA-A3HS | RPN2|ERBB3 | RPN2 | ERBB3 | 20 | 12 | 1 | 1 | 2 | 18 | 17 | 0.15 | 35870020 | 56492035 | tier3 | NA | 15015 | NA | 0 |
| CESC | TCGA-C5-A3HD-01B | TCGA-C5-A3HD | RSBN1|PTPN22 | RSBN1 | PTPN22 | 1 | 1 | -1 | -1 | 1766 | 1323 | 1227 | 0.071 | 114354332 | 114362276 | tier1 | In-frame | 15140 | NA | 0 |
| CESC | TCGA-ZJ-AAX8-01A | TCGA-ZJ-AAX8 | S100A9|FOXP1 | S100A9 | FOXP1 | 1 | 3 | 1 | -1 | 2 | 6 | 4 | 100 | 153333503 | 71007472 | tier2 | NA | 15248 | NA | 0 |
| CESC | TCGA-EK-A2PL-01A | TCGA-EK-A2PL | S100A9|NDUFV1 | S100A9 | NDUFV1 | 1 | 11 | 1 | 1 | 2 | 15 | 11 | 0.009 | 153333503 | 67375697 | tier3 | NA | 15249 | NA | 0 |
| CESC | TCGA-VS-A958-01A | TCGA-VS-A958 | S100A9|PLAT | S100A9 | PLAT | 1 | 8 | 1 | -1 | 2 | 51 | 44 | 100 | 153333503 | 42051245 | tier3 | NA | 15250 | NA | 0 |
| CESC | TCGA-MA-AA3X-01A | TCGA-MA-AA3X | S100A9|TCOF1 | S100A9 | TCOF1 | 1 | 5 | 1 | 1 | 2 | 2 | 1 | 0.1 | 153333503 | 149777917 | tier3 | 3UTR-CDS | 15251 | NA | 0 |
| CESC | TCGA-EK-A2RM-01A | TCGA-EK-A2RM | SCMH1|SDCBP2 | SCMH1 | SDCBP2 | 1 | 20 | -1 | -1 | 13 | 21 | 17 | 0.63 | 41707731 | 1301079 | tier1 | 5UTR-5UTR | 15421 | validated | 0 |
| CESC | TCGA-C5-A8XH-01A | TCGA-C5-A8XH | SDAD1|PARM1 | SDAD1 | PARM1 | 4 | 4 | -1 | 1 | 3 | 2 | 2 | 0.044 | 76911905 | 75937635 | tier1 | Out-of-frame | 15459 | NA | 0 |
| CESC | TCGA-IR-A3LC-01A | TCGA-IR-A3LC | SDC1|PLAT | SDC1 | PLAT | 2 | 8 | -1 | -1 | 2 | 25 | 23 | 0.091 | 20400560 | 42051245 | tier3 | NA | 15460 | NA | 0 |
| CESC | TCGA-DS-A7WH-01A | TCGA-DS-A7WH | SH3BP4|MST1R | SH3BP4 | MST1R | 2 | 3 | 1 | -1 | 39 | 53 | 37 | 0.85 | 235904020 | 49936696 | tier1 | 5UTR-CDS | 15809 | NA | 0 |
| CESC | TCGA-C5-A7X5-01A | TCGA-C5-A7X5 | SLC12A8|OSBPL11 | SLC12A8 | OSBPL11 | 3 | 3 | -1 | -1 | 2 | 2 | 2 | 0.15 | 124996570 | 125257477 | tier2 | Out-of-frame | 16022 | NA | 0 |
| CESC | TCGA-Q1-A6DT-01A | TCGA-Q1-A6DT | SLC16A10|NME7 | SLC16A10 | NME7 | 6 | 1 | 1 | -1 | 103 | 48 | 43 | 2.4 | 111498868 | 169102055 | tier1 | In-frame | 16027 | NA | 0 |
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