Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CESC | TCGA-DS-A1OC-01A | TCGA-DS-A1OC | NHSL1|REPS1 | NHSL1 | REPS1 | 6 | 6 | -1 | -1 | 3 | 5 | 5 | 0.35 | 139013613 | 139242261 | tier1 | NA | 11539 | NA | 0.37053 |
| CESC | TCGA-HM-A6W2-01A | TCGA-HM-A6W2 | NOTCH3|BRD4 | NOTCH3 | BRD4 | 19 | 19 | -1 | -1 | 17 | 9 | 8 | 0.01 | 15308311 | 15360101 | tier1 | Out-of-frame | 11671 | NA | 0.37741 |
| CESC | TCGA-C5-A7UH-01A | TCGA-C5-A7UH | NSD1|DPEP2 | NSD1 | DPEP2 | 5 | 16 | 1 | -1 | 37 | 22 | 19 | 0.29 | 176619020 | 68023301 | tier1 | In-frame | 11774 | NA | 0.37159 |
| CESC | TCGA-IR-A3LL-01A | TCGA-IR-A3LL | OAS3|ANXA1 | OAS3 | ANXA1 | 12 | 9 | 1 | 1 | 2 | 89 | 7 | 0.15 | 113411054 | 75772570 | tier3 | 3UTR-5UTR | 11983 | NA | 0.37455 |
| CESC | TCGA-EA-A5FO-01A | TCGA-EA-A5FO | P4HB|PLAT | P4HB | PLAT | 17 | 8 | -1 | -1 | 2 | 30 | 25 | 0.25 | 79801042 | 42051245 | tier3 | NA | 12150 | NA | 0.37812 |
| CESC | TCGA-C5-A1MQ-01A | TCGA-C5-A1MQ | PCBP2|AMHR2 | PCBP2 | AMHR2 | 12 | 12 | 1 | 1 | 228 | 178 | 151 | 0.058 | 53862616 | 53823930 | tier1 | Out-of-frame | 12365 | non-validated | 0.37683 |
| CESC | TCGA-VS-A9U5-01A | TCGA-VS-A9U5 | PGAP3|ERBB2 | PGAP3 | ERBB2 | 17 | 17 | -1 | 1 | 5 | 6 | 5 | 0.13 | 37842175 | 37844949 | tier1 | CDS-5UTR | 12651 | NA | 0.38259 |
| CESC | TCGA-VS-A9V0-01A | TCGA-VS-A9V0 | PGAP3|ERBB2 | PGAP3 | ERBB2 | 17 | 17 | -1 | 1 | 54 | 35 | 33 | 0.13 | 37840850 | 37880979 | tier1 | In-frame | 12652 | NA | 0.38259 |
| CESC | TCGA-EA-A411-01A | TCGA-EA-A411 | PHF21A|TMEM123 | PHF21A | TMEM123 | 11 | 11 | -1 | -1 | 8 | 7 | 4 | 0.27 | 46098305 | 102272937 | tier1 | Out-of-frame | 12730 | NA | 0.36749 |
| CESC | TCGA-C5-A3HD-01B | TCGA-C5-A3HD | PHTF1|PTPN22 | PHTF1 | PTPN22 | 1 | 1 | -1 | -1 | 2066 | 3112 | 2944 | 0.43 | 114300321 | 114362276 | tier1 | Out-of-frame | 12766 | NA | 0.36961 |
| CESC | TCGA-EA-A556-01A | TCGA-EA-A556 | PICK1|GCAT | PICK1 | GCAT | 22 | 22 | 1 | 1 | 14 | 11 | 11 | 0.036 | 38453594 | 38209470 | tier1 | 5UTR-CDS | 12804 | NA | 0.37268 |
| CESC | TCGA-MA-AA43-01A | TCGA-MA-AA43 | PIK3CB|ESYT3 | PIK3CB | ESYT3 | 3 | 3 | -1 | 1 | 2 | 1 | 1 | 2.6 | 138400809 | 138176410 | tier3 | Out-of-frame | 12835 | NA | 0.37354 |
| CESC | TCGA-VS-A8EJ-01A | TCGA-VS-A8EJ | PITPNC1|SKAP1 | PITPNC1 | SKAP1 | 17 | 17 | 1 | -1 | 24 | 15 | 14 | 0.12 | 65374318 | 46248021 | tier1 | Out-of-frame | 12892 | NA | 0.37683 |
| CESC | TCGA-VS-A8Q8-01A | TCGA-VS-A8Q8 | PLAUR|SMG9 | PLAUR | SMG9 | 19 | 19 | -1 | -1 | 27 | 14 | 12 | 0.003 | 44171733 | 44254899 | tier1 | CDS-5UTR | 12950 | NA | 0.36943 |
| CESC | TCGA-EK-A2RM-01A | TCGA-EK-A2RM | PLXDC1|KRT36 | PLXDC1 | KRT36 | 17 | 17 | -1 | -1 | 8 | 1 | 1 | 0.38 | 37262107 | 39645958 | tier2 | Out-of-frame | 13055 | non-validated | 0.35573 |
| CESC | TCGA-VS-A9V0-01A | TCGA-VS-A9V0 | PLXNB2|ST3GAL1 | PLXNB2 | ST3GAL1 | 22 | 8 | -1 | -1 | 19 | 41 | 34 | 0.46 | 50718434 | 134511432 | tier1 | CDS-5UTR | 13074 | NA | 0.36977 |
| CESC | TCGA-DS-A1OC-01A | TCGA-DS-A1OC | PMF1|RAB25 | PMF1 | RAB25 | 1 | 1 | 1 | 1 | 131 | 61 | 57 | 0.5 | 156182967 | 156038061 | tier1 | In-frame | 13091 | NA | 0.3782 |
| CESC | TCGA-IR-A3LA-01A | TCGA-IR-A3LA | PPFIA1|ANO1 | PPFIA1 | ANO1 | 11 | 11 | 1 | 1 | 776 | 729 | 671 | 0.9 | 70118542 | 69962564 | tier1 | In-frame | 13243 | NA | 0.36547 |
| CESC | TCGA-IR-A3LK-01A | TCGA-IR-A3LK | PPFIA3|IZUMO1 | PPFIA3 | IZUMO1 | 19 | 19 | 1 | -1 | 2 | 5 | 5 | 0.022 | 49622979 | 49248545 | tier4 | 5UTR-CDS | 13278 | NA | 0.35914 |
| CESC | TCGA-VS-A9UT-01A | TCGA-VS-A9UT | PPP1R15A|EMP3 | PPP1R15A | EMP3 | 19 | 19 | 1 | 1 | 12 | 5 | 5 | 0.069 | 49378155 | 48830087 | tier1 | CDS-5UTR | 13373 | NA | 0.35637 |
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