Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CESC | TCGA-VS-A8EJ-01A | TCGA-VS-A8EJ | KIAA0100|CRHR1 | KIAA0100 | CRHR1 | 17 | 17 | -1 | 1 | 6 | 9 | 8 | 0.058 | 26970628 | 43884376 | tier1 | CDS-5UTR | 8726 | NA | 0.3642 |
| CESC | TCGA-MA-AA41-01A | TCGA-MA-AA41 | KIAA0907|CD276 | KIAA0907 | CD276 | 1 | 15 | -1 | 1 | 19 | 7 | 7 | 0.56 | 155887290 | 74001989 | tier1 | Out-of-frame | 8809 | NA | 0.35017 |
| CESC | TCGA-DS-A3LQ-01A | TCGA-DS-A3LQ | KIAA1432|PDCD1LG2 | KIAA1432 | PDCD1LG2 | 9 | 9 | 1 | 1 | 2 | 1 | 1 | 0.047 | 5656690 | 5522533 | tier3 | CDS-5UTR | 8879 | NA | 0.34921 |
| CESC | TCGA-LP-A5U2-01A | TCGA-LP-A5U2 | KPNA1|CHRNA9 | KPNA1 | CHRNA9 | 3 | 4 | -1 | 1 | 20 | 18 | 17 | 0.55 | 122233604 | 40350899 | tier1 | 5UTR-CDS | 9093 | NA | 0.37399 |
| CESC | TCGA-IR-A3LL-01A | TCGA-IR-A3LL | KRT14|DSP | KRT14 | DSP | 17 | 6 | -1 | 1 | 2 | 2 | 1 | 0.17 | 39738531 | 7575528 | tier3 | 3UTR-CDS | 9130 | NA | 0.36676 |
| CESC | TCGA-EA-A3HR-01A | TCGA-EA-A3HR | KRT19|SLC38A5 | KRT19 | SLC38A5 | 17 | X | -1 | -1 | 2 | 3 | 2 | 1.6 | 39679869 | 48327824 | tier3 | 3UTR-5UTR | 9149 | NA | 0.37008 |
| CESC | TCGA-VS-A8EB-01A | TCGA-VS-A8EB | KRT5|DSP | KRT5 | DSP | 12 | 6 | -1 | 1 | 2 | 46 | 1 | 0.25 | 52908361 | 7575528 | tier3 | 3UTR-CDS | 9151 | NA | 0.3653 |
| CESC | TCGA-EK-A2GZ-01A | TCGA-EK-A2GZ | LRP1B|ADAP1 | LRP1B | ADAP1 | 2 | 7 | -1 | -1 | 3 | 1 | 1 | 1.4 | 142237965 | 975141 | tier3 | In-frame | 9521 | NA | 0.38089 |
| CESC | TCGA-EK-A2RJ-01A | TCGA-EK-A2RJ | LRP2|FASTKD1 | LRP2 | FASTKD1 | 2 | 2 | -1 | -1 | 28 | 29 | 28 | 0.14 | 170018982 | 170388000 | tier1 | In-frame | 9523 | NA | 0.3731 |
| CESC | TCGA-FU-A3NI-01A | TCGA-FU-A3NI | LYPD3|CCT5 | LYPD3 | CCT5 | 19 | 5 | -1 | 1 | 2 | 71 | 50 | 0.78 | 43964946 | 10250033 | tier3 | 3UTR-5UTR | 9699 | NA | 0.36715 |
| CESC | TCGA-C5-A7X3-01A | TCGA-C5-A7X3 | MCTP2|PARP6 | MCTP2 | PARP6 | 15 | 15 | 1 | -1 | 3 | 3 | 3 | 0.73 | 94901841 | 72563628 | tier1 | CDS-5UTR | 10108 | NA | 0.34205 |
| CESC | TCGA-Q1-A5R2-01A | TCGA-Q1-A5R2 | MED23|ANO2 | MED23 | ANO2 | 6 | 12 | -1 | -1 | 8 | 2 | 2 | 0.69 | 131908849 | 5841796 | tier1 | In-frame | 10210 | NA | 0.35014 |
| CESC | TCGA-C5-A3HD-01B | TCGA-C5-A3HD | MEN1|PTPRJ | MEN1 | PTPRJ | 11 | 11 | -1 | 1 | 51 | 17 | 17 | 0.073 | 64577137 | 48149332 | tier1 | In-frame | 10253 | NA | 0.38186 |
| CESC | TCGA-C5-A1M7-01A | TCGA-C5-A1M7 | MLL|CD86 | MLL | CD86 | 11 | 3 | 1 | 1 | 2 | 1 | 1 | 0.46 | 118355690 | 121838285 | tier3 | Out-of-frame | 10445 | NA | 0.38615 |
| CESC | TCGA-VS-A9UP-01A | TCGA-VS-A9UP | MMD|APPBP2 | MMD | APPBP2 | 17 | 17 | -1 | -1 | 6 | 6 | 6 | 0.63 | 53499031 | 58543820 | tier1 | In-frame | 10539 | NA | 0.35548 |
| CESC | TCGA-C5-A8XK-01A | TCGA-C5-A8XK | MUC4|TNK2 | MUC4 | TNK2 | 3 | 3 | -1 | -1 | 8 | 17 | 16 | 0.065 | 195495893 | 195610180 | tier4 | Out-of-frame | 10858 | NA | 0.38146 |
| CESC | TCGA-C5-A1MK-01A | TCGA-C5-A1MK | MYH9|NDUFV1 | MYH9 | NDUFV1 | 22 | 11 | -1 | 1 | 2 | 19 | 18 | 0.035 | 36677327 | 67375697 | tier3 | NA | 10909 | NA | 0.37889 |
| CESC | TCGA-JW-A5VJ-01A | TCGA-JW-A5VJ | MYH9|TXN2 | MYH9 | TXN2 | 22 | 22 | -1 | -1 | 24 | 23 | 21 | 0.003 | 36744949 | 36863964 | tier1 | In-frame | 10921 | NA | 0.37799 |
| CESC | TCGA-VS-A8EJ-01A | TCGA-VS-A8EJ | MYO1D|PLXDC1 | MYO1D | PLXDC1 | 17 | 17 | -1 | -1 | 2 | 2 | 2 | 0.33 | 30980861 | 37224212 | tier2 | In-frame | 10975 | NA | 0.36641 |
| CESC | TCGA-VS-A8EI-01A | TCGA-VS-A8EI | NDUFS4|GZMA | NDUFS4 | GZMA | 5 | 5 | 1 | 1 | 6 | 6 | 4 | 100 | 52954454 | 54401302 | tier1 | In-frame | 11308 | NA | 0.36794 |
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