Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CESC | TCGA-LP-A5U3-01A | TCGA-LP-A5U3 | GRB7|ERBB2 | GRB7 | ERBB2 | 17 | 17 | 1 | 1 | 888 | 70 | 65 | 0.031 | 37898709 | 37863243 | tier1 | Out-of-frame | 7416 | NA | 0.389 |
| CESC | TCGA-C5-A2LZ-01A | TCGA-C5-A2LZ | HCN2|ALS2CR11 | HCN2 | ALS2CR11 | 19 | 2 | 1 | -1 | 2 | 2 | 1 | 100 | 590577 | 202412333 | tier2 | In-frame | 7609 | NA | 0.36783 |
| CESC | TCGA-LP-A5U3-01A | TCGA-LP-A5U3 | HLA-B|CCT5 | HLA-B | CCT5 | 6 | 5 | -1 | 1 | 2 | 55 | 17 | 2.5 | 31321649 | 10250033 | tier3 | 3UTR-5UTR | 7818 | NA | 0.37757 |
| CESC | TCGA-VS-A9UO-01A | TCGA-VS-A9UO | HLA-C|CFB | HLA-C | CFB | 6 | 6 | -1 | 1 | 3 | 1 | 1 | 0.064 | 31236526 | 31913427 | tier3 | NA | 7827 | NA | 0.36917 |
| CESC | TCGA-C5-A7CJ-01A | TCGA-C5-A7CJ | HLCS|TSPEAR | HLCS | TSPEAR | 21 | 21 | -1 | -1 | 2 | 4 | 3 | 0.91 | 38269160 | 45987889 | tier2 | Out-of-frame | 7841 | NA | 0.33379 |
| CESC | TCGA-C5-A7CO-01A | TCGA-C5-A7CO | HMHA1|ABCA7 | HMHA1 | ABCA7 | 19 | 19 | 1 | 1 | 2 | 3 | 3 | 0.3 | 1083352 | 1061781 | tier3 | In-frame | 7875 | NA | 0.34949 |
| CESC | TCGA-VS-A8EC-01A | TCGA-VS-A8EC | HMHA1|GRIN3B | HMHA1 | GRIN3B | 19 | 19 | 1 | 1 | 2 | 1 | 1 | 0.14 | 1067494 | 1007627 | tier2 | In-frame | 7876 | NA | 0.36022 |
| CESC | TCGA-DS-A1OB-01A | TCGA-DS-A1OB | HSPB1|CLDN7 | HSPB1 | CLDN7 | 7 | 17 | 1 | -1 | 2 | 86 | 1 | 0.78 | 75933609 | 7166264 | tier3 | 3UTR-5UTR | 7999 | NA | 0.36542 |
| CESC | TCGA-C5-A8YQ-01A | TCGA-C5-A8YQ | INADL|APITD1-CORT | INADL | APITD1-CORT | 1 | 1 | 1 | 1 | 28 | 8 | 7 | 1.6 | 62293255 | 10493899 | tier1 | In-frame | 8220 | NA | 0.36964 |
| CESC | TCGA-Q1-A6DT-01A | TCGA-Q1-A6DT | INADL|DYNC2H1 | INADL | DYNC2H1 | 1 | 11 | 1 | 1 | 144 | 129 | 121 | 1.2 | 62483619 | 103151077 | tier1 | Out-of-frame | 8222 | NA | 0.37168 |
| CESC | TCGA-VS-A8EI-01A | TCGA-VS-A8EI | ITGA2|PARP8 | ITGA2 | PARP8 | 5 | 5 | 1 | 1 | 2 | 3 | 3 | 0.58 | 52285362 | 50055477 | tier2 | In-frame | 8375 | NA | 0.36597 |
| CESC | TCGA-C5-A2LV-01A | TCGA-C5-A2LV | ITGA3|NDUFV1 | ITGA3 | NDUFV1 | 17 | 11 | 1 | 1 | 2 | 19 | 18 | 0.079 | 48167844 | 67375697 | tier3 | NA | 8379 | non-validated | 0.36397 |
| CESC | TCGA-C5-A1MH-01A | TCGA-C5-A1MH | ITGB2|CD74 | ITGB2 | CD74 | 21 | 5 | -1 | -1 | 2 | 4 | 1 | 0.016 | 46351729 | 149792295 | tier4 | NA | 8396 | NA | 0.38435 |
| CESC | TCGA-EA-A5O9-01A | TCGA-EA-A5O9 | ITM2B|RPL30 | ITM2B | RPL30 | 13 | 8 | 1 | -1 | 2 | 12 | 5 | 0.91 | 48835524 | 99058697 | tier4 | NA | 8425 | NA | 0.36477 |
| CESC | TCGA-VS-A9UR-01A | TCGA-VS-A9UR | ITM2C|THSD4 | ITM2C | THSD4 | 2 | 15 | 1 | 1 | 2 | 1 | 1 | 0.19 | 231743962 | 72072881 | tier4 | 3UTR-CDS | 8430 | NA | 0.35503 |
| CESC | TCGA-MY-A5BE-01A | TCGA-MY-A5BE | JAG1|C20orf94 | JAG1 | C20orf94 | 20 | 20 | -1 | 1 | 2 | 5 | 5 | 3.6 | 10622108 | 10582379 | tier3 | Out-of-frame | 8468 | NA | 0 |
| CESC | TCGA-EK-A2RE-01A | TCGA-EK-A2RE | JUP|CCT5 | JUP | CCT5 | 17 | 5 | -1 | 1 | 2 | 7 | 3 | 0.13 | 39775692 | 10250033 | tier3 | 3UTR-5UTR | 8507 | non-validated | 0.37419 |
| CESC | TCGA-C5-A2LV-01A | TCGA-C5-A2LV | JUP|NDUFV1 | JUP | NDUFV1 | 17 | 11 | -1 | 1 | 2 | 9 | 3 | 0.2 | 39775692 | 67375697 | tier3 | NA | 8509 | non-validated | 0.37048 |
| CESC | TCGA-C5-A1MP-01A | TCGA-C5-A1MP | JUP|PTN | JUP | PTN | 17 | 7 | -1 | -1 | 2 | 3 | 2 | 0.7 | 39910856 | 136938384 | tier4 | 3UTR-CDS | 8510 | NA | 0.37253 |
| CESC | TCGA-VS-A8EI-01A | TCGA-VS-A8EI | KCNC3|PRKDC | KCNC3 | PRKDC | 19 | 8 | -1 | -1 | 2 | 4 | 4 | 0.75 | 50823850 | 48730122 | tier4 | In-frame | 8571 | NA | 0.37952 |
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