Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CESC | TCGA-C5-A2LX-01A | TCGA-C5-A2LX | ERBB2|IKZF3 | ERBB2 | IKZF3 | 17 | 17 | 1 | -1 | 15 | 13 | 12 | 0.48 | 37872858 | 37985741 | tier1 | Out-of-frame | 5720 | NA | 0.39357 |
| CESC | TCGA-DS-A7WF-01A | TCGA-DS-A7WF | ERBB2|NEUROD2 | ERBB2 | NEUROD2 | 17 | 17 | 1 | -1 | 266 | 143 | 118 | 0.043 | 37856564 | 37762857 | tier1 | CDS-5UTR | 5721 | NA | 0.38549 |
| CESC | TCGA-Q1-A73R-01A | TCGA-Q1-A73R | ERBB2|PGAP3 | ERBB2 | PGAP3 | 17 | 17 | 1 | -1 | 181 | 103 | 75 | 0.13 | 37851434 | 37830932 | tier1 | 5UTR-CDS | 5722 | NA | 0.38259 |
| CESC | TCGA-Q1-A73R-01A | TCGA-Q1-A73R | ERBB2|PPP1R1B | ERBB2 | PPP1R1B | 17 | 17 | 1 | 1 | 10759 | 25571 | 22613 | 3.8 | 37883800 | 37791860 | tier1 | In-frame | 5726 | NA | 0.38487 |
| CESC | TCGA-C5-A7CO-01A | TCGA-C5-A7CO | F11R|USF1 | F11R | USF1 | 1 | 1 | -1 | -1 | 5 | 2 | 2 | 1 | 160990800 | 161013150 | tier1 | CDS-5UTR | 5969 | NA | 0.38181 |
| CESC | TCGA-DS-A1O9-01A | TCGA-DS-A1O9 | FAM38A|CBFA2T3 | FAM38A | CBFA2T3 | 16 | 16 | -1 | -1 | 12 | 5 | 3 | 0.097 | 88815792 | 88949169 | tier1 | In-frame | 6165 | NA | 0.36329 |
| CESC | TCGA-HM-A3JK-01A | TCGA-HM-A3JK | FAT1|NTRK3 | FAT1 | NTRK3 | 4 | 15 | -1 | -1 | 5 | 7 | 7 | 0.87 | 187627717 | 88680792 | tier1 | Out-of-frame | 6271 | NA | 0.38927 |
| CESC | TCGA-VS-A9U7-01A | TCGA-VS-A9U7 | FCHSD1|NCKAP1L | FCHSD1 | NCKAP1L | 5 | 12 | -1 | 1 | 66 | 78 | 73 | 0.21 | 141029926 | 54936359 | tier1 | In-frame | 6384 | NA | 0.35372 |
| CESC | TCGA-VS-A8QF-01A | TCGA-VS-A8QF | FCHSD2|FAM168A | FCHSD2 | FAM168A | 11 | 11 | -1 | -1 | 3 | 3 | 3 | 0.096 | 72794740 | 73131044 | tier1 | 5UTR-CDS | 6397 | NA | 0.36368 |
| CESC | TCGA-BI-A0VR-01A | TCGA-BI-A0VR | FCHSD2|LDLRAD3 | FCHSD2 | LDLRAD3 | 11 | 11 | -1 | 1 | 2 | 1 | 1 | 0.61 | 72851076 | 36248635 | tier2 | Out-of-frame | 6401 | NA | 0.36462 |
| CESC | TCGA-DS-A3LQ-01A | TCGA-DS-A3LQ | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 32 | 10 | 10 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6499 | NA | 0.38077 |
| CESC | TCGA-LP-A7HU-01A | TCGA-LP-A7HU | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 2 | 2 | 2 | 0.12 | 1808661 | 1737458 | tier3 | In-frame | 6505 | NA | 0.38077 |
| CESC | TCGA-VS-A9UD-01A | TCGA-VS-A9UD | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 153 | 135 | 127 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6507 | NA | 0.38077 |
| CESC | TCGA-WL-A834-01A | TCGA-WL-A834 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 1624 | 1664 | 1516 | 0.12 | 1808661 | 1737458 | tier1 | In-frame | 6508 | NA | 0.38077 |
| CESC | TCGA-ZJ-AAXT-01A | TCGA-ZJ-AAXT | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 2203 | 2582 | 2375 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6511 | NA | 0.38077 |
| CESC | TCGA-C5-A1ML-01A | TCGA-C5-A1ML | FXR1|NAALADL2 | FXR1 | NAALADL2 | 3 | 3 | 1 | 1 | 20 | 16 | 12 | 0.17 | 180653019 | 175165017 | tier1 | Out-of-frame | 6840 | validated | 0.35921 |
| CESC | TCGA-DS-A3LQ-01A | TCGA-DS-A3LQ | FZD6|BAALC | FZD6 | BAALC | 8 | 8 | 1 | 1 | 47 | 57 | 53 | 1.3 | 104312512 | 104240217 | tier1 | In-frame | 6860 | NA | 0.35497 |
| CESC | TCGA-ZJ-AAXB-01A | TCGA-ZJ-AAXB | GALNT11|CNTNAP2 | GALNT11 | CNTNAP2 | 7 | 7 | 1 | 1 | 4 | 1 | 1 | 0.079 | 151722969 | 147259230 | tier2 | 5UTR-CDS | 6914 | NA | 0.36223 |
| CESC | TCGA-JX-A3PZ-01A | TCGA-JX-A3PZ | GNAS|SNW1 | GNAS | SNW1 | 20 | 14 | 1 | -1 | 2 | 72 | 17 | 0.99 | 57486241 | 78189203 | tier3 | 3UTR-CDS | 7202 | NA | 0.37789 |
| CESC | TCGA-DS-A7WI-01A | TCGA-DS-A7WI | GPNMB|KLHL7 | GPNMB | KLHL7 | 7 | 7 | 1 | 1 | 27 | 35 | 31 | 0.34 | 23293931 | 23195610 | tier1 | NA | 7347 | NA | 0.35667 |
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