Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A2-A0EV-01A | TCGA-A2-A0EV | ZNF83|PCDH15 | ZNF83 | PCDH15 | 19 | 10 | -1 | -1 | 22 | 14 | 14 | 0.3 | 53138319 | 56424050 | tier1 | 5UTR-5UTR | 20683 | NA | 0 |
| BRCA | TCGA-A8-A094-01A | TCGA-A8-A094 | ZNRF3|ASCC2 | ZNRF3 | ASCC2 | 22 | 22 | 1 | -1 | 145 | 141 | 128 | 0.2 | 29280054 | 30221246 | tier1 | In-frame | 20700 | validated | 0 |
| BRCA | TCGA-AN-A0FW-01A | TCGA-AN-A0FW | ZPLD1|FAM55C | ZPLD1 | FAM55C | 3 | 3 | 1 | 1 | 23 | 14 | 13 | 0.007 | 101948185 | 101535639 | tier1 | 5UTR-CDS | 20707 | NA | 0 |
| CESC | TCGA-ZJ-A8QO-01A | TCGA-ZJ-A8QO | ABCA1|PTGR1 | ABCA1 | PTGR1 | 9 | 9 | -1 | -1 | 22 | 11 | 9 | 0.25 | 107665895 | 114359712 | tier1 | CDS-5UTR | 35 | NA | 0.38077 |
| CESC | TCGA-LP-A4AU-01A | TCGA-LP-A4AU | ABCA12|MICU1 | ABCA12 | MICU1 | 2 | 10 | -1 | -1 | 2 | 1 | 1 | 2.7 | 216002863 | 74326552 | tier3 | CDS-5UTR | 39 | NA | 0.34189 |
| CESC | TCGA-VS-A8QC-01A | TCGA-VS-A8QC | ABCA5|MBTD1 | ABCA5 | MBTD1 | 17 | 17 | -1 | -1 | 5 | 7 | 6 | 0.15 | 67290796 | 49258055 | tier1 | In-frame | 45 | NA | 0.34481 |
| CESC | TCGA-VS-A8EC-01A | TCGA-VS-A8EC | ABCC1|NDE1 | ABCC1 | NDE1 | 16 | 16 | 1 | 1 | 3 | 3 | 2 | 0.27 | 16110478 | 15758593 | tier1 | CDS-5UTR | 54 | NA | 0.36747 |
| CESC | TCGA-HM-A3JJ-01A | TCGA-HM-A3JJ | ABLIM3|TRPM8 | ABLIM3 | TRPM8 | 5 | 2 | 1 | 1 | 5 | 5 | 1 | 0.92 | 148521671 | 234835178 | tier2 | CDS-5UTR | 120 | NA | 0.35586 |
| CESC | TCGA-EA-A3HU-01A | TCGA-EA-A3HU | ACADVL|CD74 | ACADVL | CD74 | 17 | 5 | 1 | -1 | 2 | 2 | 1 | 0.14 | 7120492 | 149792314 | tier4 | CDS-5UTR | 246 | NA | 0.36558 |
| CESC | TCGA-IR-A3LH-01A | TCGA-IR-A3LH | ACP2|CD74 | ACP2 | CD74 | 11 | 5 | -1 | -1 | 2 | 2 | 1 | 0.47 | 47261044 | 149792295 | tier4 | NA | 300 | NA | 0.362 |
| CESC | TCGA-DS-A7WH-01A | TCGA-DS-A7WH | ADAP1|SUN1 | ADAP1 | SUN1 | 7 | 7 | -1 | 1 | 3 | 5 | 3 | 0.11 | 959605 | 908986 | tier1 | Out-of-frame | 454 | NA | 0.37238 |
| CESC | TCGA-EA-A5ZD-01A | TCGA-EA-A5ZD | AFF1|PTPN13 | AFF1 | PTPN13 | 4 | 4 | 1 | 1 | 261 | 169 | 148 | 0.83 | 88048855 | 87718027 | tier1 | In-frame | 587 | NA | 0.37171 |
| CESC | TCGA-IR-A3LB-01A | TCGA-IR-A3LB | AGR2|ANXA1 | AGR2 | ANXA1 | 7 | 9 | -1 | 1 | 2 | 104 | 87 | 0.48 | 16832266 | 75772570 | tier3 | 3UTR-5UTR | 668 | NA | 0.37717 |
| CESC | TCGA-UC-A7PD-01A | TCGA-UC-A7PD | AGRN|BAD | AGRN | BAD | 1 | 11 | 1 | -1 | 72 | 34 | 31 | 1 | 957842 | 64039275 | tier1 | In-frame | 670 | NA | 0.36591 |
| CESC | TCGA-IR-A3LK-01A | TCGA-IR-A3LK | APIP|SLC1A2 | APIP | SLC1A2 | 11 | 11 | -1 | -1 | 6 | 4 | 4 | 0.57 | 34909840 | 35287305 | tier2 | In-frame | 1120 | NA | 0.35503 |
| CESC | TCGA-EA-A50E-01A | TCGA-EA-A50E | ARL8B|ITPR1 | ARL8B | ITPR1 | 3 | 3 | 1 | 1 | 45 | 38 | 33 | 0.31 | 5164273 | 4887823 | tier1 | In-frame | 1405 | NA | 0.37826 |
| CESC | TCGA-JW-A5VJ-01A | TCGA-JW-A5VJ | ARL8B|ITPR1 | ARL8B | ITPR1 | 3 | 3 | 1 | 1 | 7 | 1 | 1 | 0.31 | 5164273 | 4808214 | tier3 | In-frame | 1406 | NA | 0.37826 |
| CESC | TCGA-C5-A7CH-01A | TCGA-C5-A7CH | ATP2B1|CEP290 | ATP2B1 | CEP290 | 12 | 12 | -1 | -1 | 5 | 3 | 3 | 0.013 | 90010579 | 88478629 | tier1 | In-frame | 1713 | NA | 0.36602 |
| CESC | TCGA-EA-A1QS-01A | TCGA-EA-A1QS | B4GALT1|BAG1 | B4GALT1 | BAG1 | 9 | 9 | -1 | -1 | 210 | 139 | 130 | 0.17 | 33166756 | 33262828 | tier1 | In-frame | 1868 | NA | 0.37586 |
| CESC | TCGA-EK-A2PM-01A | TCGA-EK-A2PM | BACE2|SRGAP1 | BACE2 | SRGAP1 | 21 | 12 | 1 | 1 | 4 | 2 | 2 | 0.95 | 42540502 | 64377727 | tier1 | Out-of-frame | 1889 | NA | 0.37816 |
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